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Detailed information on CNT30104758


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007022, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691212Oryza rufipogonOryza sativa99.4797.3898.25744forward
CNT30371046Oryza rufipogonOryza glumipatula12.5720.2694.6894reverse complement

Expression of CNT30104758

Peptides detected in this lncRNA

>peptide 1 (82 aa)
PIWHRRTTAPDRSVSWEKWREPLPTKPRSQYQSQDIALVAAQTARECNRRHGRGEHQQQQQQRNQRSNTQHHRQQQGTRTKP*

>peptide 2 (49 aa)
MARTASYETAISVPVPGHSAGCSSDSPRMQPTTRTRRTPTTAAAAEPTV*

>peptide 3 (36 aa)
PQSGTAVQRHLTGACRGKNGANRFLRNRDLSTSPRT*

Sequence

>CNT30104758
CCCCAATCTGGCACCGCCGTACAACGGCACCTGACAGGAGCGTGTCGTGGGAAAAATGGCGCGAACCGCTTCCTACGAAACCGCGATCTCAGTACCAGTC
CCAGGACATAGCGCTGGTTGCAGCTCAGACAGCCCGAGAATGCAACCGACGACACGGACGAGGCGAACACCAACAACAGCAGCAGCAGCGGAACCAACGG
TCTAACACCCAACACCACAGGCAGCAGCAGGGAACTAGGACGAAACCCTAATCTTTACTTCACTTCAACTTCATCTTCGGAGCTGGCAGAACTATATTTA
TATAGAGAGCAAGGGTGAGTACTTATGTACTCAGCAAGCCAGGGGAACTTAGGTGGTTAATGCAGGCTTCAAGGGAAGGCTGTTATTTTGCAAACAGTTT
TATTTTCAAGTTTTCAACAATCTAAGTGTGTGCTTTCCACAACCAGAGCGAGACAAGTCTCAGCTCGGTCGGGAGGTGCGAAGTAACAAATTTATTTATC
AAGATTTGCACAACTCCCAGAGTTGGCTTCAAATCTGGTTTTTCCCAAACCAAACCAATTTTCCAAACTTCCCGATAATAGTGGTCCCCAAACGACCAAT
CACTTCCAGGGACACCCGGTCCCGCTGTCCCCCGGACAGCTAAATGCTTCCCAAGCATTAGGTTTCCCAAACCTTAACACCTTTTCATAAAACAGGGTAA
AACAAAAACTACGCTAAGGAATCACCTCACATCCGCCCATGACCGTGG