Detailed information on CNT30104748


BLAST search results

BLAST vs Swiss-Prot:
sp|P92527|CCMC_ARATH, E-value = 1e-128

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021275Oryza rufipogonCitrullus lanatus18.0580.3294.47253forward
CNT3098127Oryza rufipogonSolanum tuberosum5.7823.5592.5981forward
CNT30225649Oryza rufipogonHordeum vulgare14.7692.8398.55207forward
CNT30440671Oryza rufipogonAegilops tauschii20.5410098.96288forward
CNT30627054Oryza rufipogonDaucus carota10.8442.1192.11152forward
CNT30686102Oryza rufipogonTriticum urartu9.8420.5796.38138forward
CNT30596149Oryza rufipogonOryza meridionalis16.4165.9100230forward

Expression of CNT30104748

Peptides detected in this lncRNA

>peptide 1 (31 aa)
CWSKKTHSSRSITTSAVVRISFSSSKPTLFL*

>peptide 2 (63 aa)
MNTEVKRASHTRKVPHIGLPRNPPVTNVNKVEKAPISVPVPEERRKRGCFVNGNKELFIAVAI*

>peptide 3 (38 aa)
MTEFPLLIFAPLMCGSPCLRGGISEKEGLTFYTGPSPN*

>peptide 4 (56 aa)
NAGARRRIQVDLLRPARLFVFHFLLPSRRSSYKRRKHSLNYLLNLVLLFDPFIFPF*

>peptide 5 (38 aa)
MLEQEDAFKSIYYDQRGCSYFIFFFQADALLIKEESTH*

Sequence

>CNT30104748
AATGCTGGAGCAAGAAGACGCATTCAAGTCGATCTATTACGACCAGCGCGGTTGTTCGTATTTCATTTTCTTCTTCCAAGCCGACGCTCTTCTTATAAAA
GAAGAAAGCACTCACTGAATTACTTACTGAATCTCGTCCTACTTTTTGACCCATTTATTTTTCCTTTCTAGGTTGGTGGGCGCTTTCACCATTCAGCCAT
GGATGCTTTAGCGAGTGAACTAGGTTTTTATTTGAGAGCGAACTAGGTTTTTAGTGGTATTCCTTCTCGAGCTTCTATTTCTTCCGTTAAGGGAGATTCG
GGAAAAGATGGAATAGGAAGACGTGTTTCCAGAACGAACAAGATACGGGTAGAGAAGGGGAAGTTAGCAAAGTTAGACAAGATTGGAATGGGCATAGGAA
CATGTATTGATGTACCAGATCGGCTAATACTCCCAGGTTGATGCGATGTATTCCACCAGTTGACTGGAGACTTTATTATTGGTATATCGATCGGTCCAGC
ACGGATTGAAATAGGAGCCGGTTCGACAGGAAGCTTTTGAAAACGCAGTGCACCCAGGTAAATAAGAAACAAGATGAATACAGAAGTTAAACGAGCATCC
CACACCCGAAAGGTACCCCACATAGGCCTTCCCCGAAATCCCCCAGTCACTAACGTAAACAAAGTAGAAAAAGCACCAATTTCTGTACCGGTTCCGGAAG
AGCGAAGAAAAAGGGGATGTTTTGTTAATGGGAACAAGGAACTGTTTATAGCTGTCGCGATATAAATAACTATACTCATCCGAGCCGCAGGAACATGTAC
ATACGAAATACGAGAATTTCCACCTTGTTGAAGATCTGGTGGTGCTACCCGAAGACTTAAATGAATAGCCATCGCTGTTAAGAACAACCGAGATCCAATG
AGAATTTGCGCGTAGCTTTTTGTCTTTGACATAAAAAAATAAGGTTGTAATAACGAAACTGACATTTTTTTTCCTTGCCTTGCAAGTGGAACAAGAAAGA
CTATATAGTGATTTTGATTCTATAAACAATCAAAGGATTTCGCATGCTTTCCATGGAATGACGGAATTCCCCTTGCTTATTTTCGCTCCGCTCATGTGCG
GCTCTCCTTGCTTGCGGGGCGGCATATCGGAAAAAGAAGGATTGACTTTCTATACGGGCCCGTCCCCTAACTAACGATTATGCTGCTCTCGCCTTTTTTT
AATCTTTTAGCTTTGGATCATCGCTAAGTCCCATTAATTGATCATAACGATATCGTGGAAATGCTGCACGGACCCATATATATAGAAAATAAACTCGAAG
TAGTAAAAAAACTACAGTTACCGCCATAGACAATGATTCATTTGTGAATGCTAAATAATAGTTGCCCATAAGAAGATCCATTATTGGGTGAATGGAGAAT
GG