CANTATAdb - search

Detailed information on CNT30104733

BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 2e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30597225	Oryza rufipogon	Oryza meridionalis	66.78	56.23	97.54	406	forward
CNT30578611	Oryza rufipogon	Oryza barthii	66.45	41.95	98.51	404	forward
CNT30118036	Oryza rufipogon	Oryza nivara	65.95	55.01	97.51	401	forward

Expression of CNT30104733

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLINCTCLTLSKPMMRTKASGYAFFASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 2 (37 aa)
QLNTDTQKKKRKRKNMHEGTKALSCRLTPRNPVAYTR*

Sequence

>CNT30104733
GCAGCTTAACACGGACACACAAAAAAAAAAAAGAAAAAGAAAGAACATGCACGAAGGAACGAAAGCGCTTAGTTGCCGCCTGACTCCTCGCAACCCGGTG
GCTTATACGCGATGAAGCTGATTAACTGCACCTGCCTAACGTTGTCAAAGCCAATGATGCGAACGAAGGCATCAGGGTATGCCTTCTTTGCCTCCTCGAG
CTCCTTGAGCACTTGGGTGGCATCGGTGCATCCAAACATGGGCAGTTTCCACATGGTCCAGTACCTACCGTCATAGTATCCGGGTGATCTGTGATTTTCA
CGGTAGACGAATCCGACCTTGCTGAACTCCAAGCAAGGCACCCACTTAGATCGGAGCAGGTACTCGATCTGCTTCAAGAGGTCCTCGACCGTGAGCGGTG
GCAGGTACGACAGGGTCTCAAACTTCTTGATGCCTTCAATCGGCCATCACGGTGGGCGCCATTGCTAGCTCTCTAGCTTTCTGCTTGGTGAGGTGCTAGA
GCAGAGTCACGCTGCAGCAGTGGCTTGAGGACCTGTGTGGTAATCCATTACGTCTATAAATAACCAAATCGCAGGTGGCATTGGAAGGCAGCGCTTGGTT
GATCCGGG