Detailed information on CNT30104730


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL2|NLT2B_ORYSJ, E-value = 2e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30444120Oryza rufipogonAegilops tauschii24.218.7886.7583forward
CNT30136219Oryza rufipogonLolium perenne35.8620.4388.62123forward
CNT30682526Oryza rufipogonTriticum urartu24.215.9687.9583forward
CNT30367564Oryza rufipogonSorghum bicolor25.6615.396.5988forward
CNT30371496Oryza rufipogonOryza glumipatula77.5589.2688.72266forward
CNT30582166Oryza rufipogonEchinochloa crusgalli21.8711.969675forward
CNT30498573Oryza rufipogonDigitaria exilis37.3226.8388.28128forward
CNT30117882Oryza rufipogonOryza nivara83.0965.5296.14285forward

Expression of CNT30104730

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MAAMVVCGPARSRAATRATNTSCARAISILVVCADDRSTLLLLLVCGARLLL

>peptide 2 (35 aa)
MLTPHLEGMLAALPALRPLMLPATFLRQLQAPPRA*

>peptide 3 (95 aa)
GAVDGGADGVGDADAALGGDAGGIAGVEAADAAGHVLEAVAGAAAGVAEAGRHGGVDLAAADGGHGGVWARQEQSCHEGDQHQLCTGHLDLGRVC*

Sequence

>CNT30104730
CTGGAGCAGTCGATGGAGGGGCTGATGGTGTAGGGGATGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCATTGCCGGCGTTGAGGCCGCTGATGCTGC
CGGCCACGTTCTTGAGGCAGTTGCAGGCGCCGCCGCGGGCGTAGCTGAGGCAGGGCGACACGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCATGGT
GGTGTGTGGGCCCGCCAGGAGCAGAGCTGCCACGAGGGCGACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACGATCGATCG
ACTTTGCTGCTGCTGCTGGTGTGTGGTGCTCGTTTGCTGCTGC