CANTATAdb - search

Detailed information on CNT30104729

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697491	Oryza rufipogon	Oryza sativa	100	79.88	100	544	forward
CNT30105628	Oryza rufipogon	Oryza longistaminata	70.77	95.3	98.18	385	forward

Expression of CNT30104729

Peptides detected in this lncRNA

>peptide 1 (30 aa)
TTRRRRPRRRRWVAGAGSSSTSRRRRRGWC*

>peptide 2 (93 aa)
DDAPAPAAEAAVGGRCWVVVDVEEAAAWLVLSLARRALFSWLSACAFLRSRSFSSIMYTFSRIMQPRNVQVADEKMIHGKWSSFNSRQIRNTK*

>peptide 3 (71 aa)
RRAGAGRGGGGGWPVLGRRRRRGGGGVVGVELGEEGLVLLVECLRLPPQPLVLLHYVHVLQDHATKKCASC*

Sequence

>CNT30104729
GACGACGCGCCGGCGCCGGCCGCGGAGGCGGCGGTGGGTGGCCGGTGCTGGGTCGTCGTCGACGTCGAGGAGGCGGCGGCGTGGTTGGTGTTGAGCTTGG
CGAGGAGGGCCTTGTTCTCCTGGTTGAGTGCCTGCGCCTTCCTCCGCAGCCGCTCGTTCTCCTCCATTATGTACACGTTCTCCAGGATCATGCAACCAAG
AAATGTGCAAGTTGCTGATGAGAAGATGATCCATGGAAAATGGAGCAGTTTCAACTCGAGACAGATAAGAAACACCAAGTAGTCCCTCACCTTTGATCTG
AAGATGCTGCTGAGCTAGCTAGAGAGAAGGAAGAAGGAAGATAGTACTGGGATAGCAGGTTTGGCAGAGGAAGAAGAGGAGATTGTTCTTGAGCTGTGCA
GAGCAGTGGTGTTCGCGTAGACGGCCGTCTACTGTATTTATAGCCCTCGTGGAGTATAGTGGCTGTATGTACTGTGTACTGTATATCTGCTCTGCTCTGC
GGGTCAATCACGGCCTGCAGTTCAGAGTTGAGAATGAAATCGCG