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Detailed information on CNT30104723


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9M092|WAKLM_ARATH, E-value = 3e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555574Oryza rufipogonOryza glaberrima89.6510091.49658forward
CNT30111182Oryza rufipogonOryza longistaminata55.0470.2699.5404forward
CNT30578574Oryza rufipogonOryza barthii5088.4390.74367forward

Expression of CNT30104723

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MDTFPHLPGQPGNEIAGSEVVVDIAIAWKTMSMRRTDASCMVAELEVLPSSLHMKLSWKLEPLMLYVRLT*

>peptide 2 (55 aa)
MEDDEHEENGCFLHGCGVGGSSQLPTHEVVLEVGTTDALCKADLVKEKTMKASAN*

>peptide 3 (29 aa)
MYTTLFVLDQKENFISTNSHCPTPINTDA*

>peptide 4 (34 aa)
MGKGWIHFRTCQGSLAMKLQVQRWWLISPLHGRR*

Sequence

>CNT30104723
ATGTAACTGACTGGACCGTAAACGCGCACCTCGCCACGCTCCAGGGAGATGTCGATGACCTCTGTTTCTGATAGGAGGTCTCTAACCATAGGCCGTGGTG
GCTGGAAGGTGTCGTTGCAGGTGATGGTGAAGTAGCTGCTCAGGCTGGTCGCAGAACAACCAGCGCCGATGCCAAATGGGTAAGGGATGGATACATTTCC
GCACTTGCCAGGGCAGCCTGGCAATGAAATTGCAGGTTCAGAGGTGGTGGTTGATATCGCCATTGCATGGAAGACGATGAGCATGAGGAGAACGGATGCT
TCTTGCATGGTTGCGGAGTTGGAGGTTCTTCCCAGCTCCCTACACATGAAGTTGTCTTGGAAGTTGGAACCACTGATGCTCTATGTAAGGCTGACTTAGT
TAAGGAGAAAACGATGAAAGCTTCAGCTAATTAATCAGCTCCTAAATTCTGAGCACATATAAAGCCAACCCACACTATGGTTACCGAAGTTTCGAAATTT
TAAGGTTCCGTTGTTTTTCCAATGTATACCACATTATTTGTATTGGATCAGAAAGAAAATTTCATTTCCACAAATAGTCATTGTCCGACTCCAATTAACA
CCGATGCCTGAATATCCCAGACAATTAGTGTATGAACTCTGAAATTGGGTATGAGTTCTGAGGTGTATATCTTCCTCTGAATTTTTTCCTCCACTTGTAA
TTTATAGATTATACTTCTAACAGTGATCAGGAGC