Detailed information on CNT30104717


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30551995Oryza rufipogonOryza glaberrima20.284.8691.6772reverse complement
CNT30106115Oryza rufipogonOryza longistaminata40.8515.4484.14145reverse complement

Expression of CNT30104717

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTGTAATRAQLRQQKKVAVVVGFGWGKRGETGKMSSPRRGKPDGARELEERLRGR

>peptide 2 (42 aa)
LSYVSSSSSRSSSSLLLPAGHRGEGGSRAPVLRWLNGLDGGV*

>peptide 3 (34 aa)
CHMSLLLPPVLLLLFSFQPGTEEREGVGRRCSGG*

>peptide 4 (30 aa)
MGKERGNWKNEFTSARQARWRKGIGREATGE

Sequence

>CNT30104717
TTGTCATATGTCTCTTCTTCTTCCTCCCGTTCTTCTTCTTCTCTTCTCCTTCCAGCCGGGCACAGAGGAGAGGGAGGGAGTAGGGCGCCGGTGCTCCGGT
GGTTGAACGGCCTCGACGGCGGCGTCTAAGCGTGTTCCGGAGCATCACGCACCCGGGGAGGGTGGAGGAAGGCAGAGGGAGAGAGGAGGATGACCGGAAC
GGCGGCAACAAGAGCACAGCTCCGGCAACAAAAGAAGGTGGCTGTGGTGGTTGGTTTCGGATGGGGAAAGAGAGGGGAAACTGGAAAAATGAGTTCACCT
CGGCGAGGCAAGCCCGATGGCGCAAGGGAATTGGAAGAGAGGCTACGGGGGAGGA