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Detailed information on CNT30104687


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697737Oryza rufipogonOryza sativa35.4440.83100247forward
CNT30578606Oryza rufipogonOryza barthii67.2926.9598.72469forward

Expression of CNT30104687

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MILVAGVLLYLDLGSNSRKIWNLGFVQIGYFS*

>peptide 2 (56 aa)
CLPRFNSPPPATSSIIVLLPRLLPPPPPPPPPPHTQQSLSSFPTCCXICQIGKPSI*

>peptide 3 (39 aa)
AVSPDSTPHHRPPLASLCFFPVCYPLPLPPLPPHTHNNL*

Sequence

>CNT30104687
GCTGTCTCCCCCGATTCAACTCCCCACCACCGGCCACCTCTAGCATCATTGTGCTTCTTCCCCGTCTGCTACCCCCTCCCCCTCCCCCCCCTCCCCCCCC
ACACACACAACAATCTTTGAGCTCCTTCCCTACCTGCTGCGNGATTTGCCAAATTGGTAAGCCATCAATCTGATTTGCTTAGGGATTTACCCAGAAATTT
GAGTTCTAAATTTGGGTATTTTTCGTTTTAGGGTTTTGAAATCATGCGACGTGCGGCCGAAGATAGAAACCGGTGAGAATGATTCTGGTGGCTGGAGTTT
TGCTTTATTTGGATTTGGGATCTAATTCGAGGAAAATTTGGAATTTAGGGTTTGTGCAAATTGGGTATTTTTCCTAGAACCAATTTTTGTATTTTTATAT
GTTGTATATATGCAAGTTGTCCTAGTGTAACACGAACCGGTTTAAATTTAGCCCAATTTATGTAAAATCCTGATCGGAACCGATTTGGTGCGGACTTAGG
ATTACTTTGACTTTTTTTCTCCGTGTCAAATTGAATCGGATCTGTGATTCTTTTGTGCATTGGCCAAAGTATGCGATAAACTCATACGGATACAGACACA
ATCAGGGACGACGTACAAAATTTGTGGCAAAAACATCTTAAACTTTTATAATAGGAAAAGATAAAGATGAAAGAGAGAGTTGTATGTTGAATTTAAC