Detailed information on CNT30104684


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84N29|NLTP3_WHEAT, E-value = 3e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30136898Oryza rufipogonLolium perenne17.722.4188.8954forward
CNT30342139Oryza rufipogonEragrostis tef32.7929.7687100forward
CNT30367194Oryza rufipogonSorghum bicolor23.9330.887.6773forward
CNT30597178Oryza rufipogonOryza meridionalis40.9838.1193.6125forward
CNT30118058Oryza rufipogonOryza nivara82.9547.38100253forward

Expression of CNT30104684

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MHGAIADPTCPHVIAADAPGAATTIAITITAATALKFKAAISI*

>peptide 2 (82 aa)
GEADVDAALAGDAGGGAEPLDAVAASLGEATPPRHVRDARRDRRPHLPARYRRRRPRRRHHHRHHHHGGHRLEVQSRHIYLD*

>peptide 3 (35 aa)
GKPTLTPHLPGMPAAAPSPLTPLQHPWVRPPLPVT*

Sequence

>CNT30104684
GGGGAAGCCGACGTTGACGCCGCACTTGCCGGGGATGCCGGCGGCGGCGCCGAGCCCCTTGACGCCGTTGCAGCATCCCTGGGTGAGGCCACCCCTCCCC
GTCACGTAAGAGATGCACGGCGCGATCGCCGACCCCACCTGCCCGCACGTTATCGCCGCCGACGCCCCCGGCGCCGCCACCACCATCGCCATCACCATCA
CGGCGGCCACCGCCTTGAAGTTCAAAGCCGCCATATCTATCTAGACTGATGGATGATCGATCGAGTAGCTAGGTAAGCTTCGTTCAGTCAGCGTCTCCTC
GTCGC