Detailed information on CNT30104673


BLAST search results

BLAST vs Swiss-Prot:
sp|Q07060|ATP9_PETSP, E-value = 6e-26

BLAST vs NONCODE:
NONORUT002446, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30537800Oryza rufipogonEucalyptus grandis31.16.3286.7218forward
CNT30550185Oryza rufipogonIpomoea triloba33.3855.3294.02234forward
CNT3020733Oryza rufipogonCitrullus lanatus17.8327.2393.6125forward
CNT3047959Oryza rufipogonPrunus dulcis16.2621.3589.47114reverse complement
CNT30221525Oryza rufipogonHordeum vulgare34.3828.6695.02241forward
CNT30141896Oryza rufipogonLolium perenne32.6718.9689.08229forward
CNT30628273Oryza rufipogonDaucus carota29.8134.3289209forward
CNT30687678Oryza rufipogonTriticum urartu34.3830.6296.68241forward
CNT3036889Oryza rufipogonCucumis melo32.3813.1585.9227forward

Expression of CNT30104673

Peptides detected in this lncRNA

>peptide 1 (74 aa)
EHKHSRPSTSLYLCLAVYLVLLLKKFTLVSQAYKFEEEYCIDLNQVLPIIAGQKQFDRKKSVFLPKSSYERSLA*

Sequence

>CNT30104673
GTGAGCACAAGCACAGCCGGCCTTCCACCTCTTTATACTTATGTTTAGCAGTGTACCTGGTCTTACTTTTGAAAAAGTTTACGCTTGTGTCCCAAGCTTA
CAAGTTCGAAGAAGAGTATTGTATTGACCTGAATCAAGTCTTGCCTATTATTGCTGGGCAAAAGCAGTTTGATAGGAAGAAGTCCGTATTTCTACCGAAA
AGTAGTTACGAAAGGAGTCTTGCATAAGTTGTTGACGTTGCTTCCGGAGAAGTAGTTAGTTTCCAGAACAGAGCGAGAAAGAAGAGAAAGAGAGGTACGC
ACTGTGAAAGAAGCCCACGTTCCCACTCTTCTTTCCCCCACCAACAACTAGTAGGTTGGGGGGCCTCGGTATCTCTATTTGCAAAGAGAGATATCTACAC
CAAGAAATATGTGATCGGAAAACGAATGAAATCAGAAAGGCCATCATTGGGGCAAACAATGCAATAGCTTCGGTGAGAGCAAAGCCCAAAATGGCATAAC
CAAATAATTGTTTAGCCAATGAAGGATTTCGCGCCACGGAATGAATCGAAGAACTGAGGACGTTTCCAATACCGACAGCAGCTCCCGCTAAAGCAATTGT
AGCAGCTCCGGCACCTATTGATTTAGCTCCTTCTAACATGTCGAGTCGTGGAGACTTGACTTTGCTCGTCACGCTTTTCTTTCGCAGCTCTTTCCTGGGT
T