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Detailed information on CNT30104669


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 7e-92

BLAST vs NONCODE:
NONORUT002193, E-value = 5e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672909Oryza rufipogonSetaria viridis42.3449.6583.76351forward
CNT30521106Oryza rufipogonSetaria italica44.0350.3483.56365forward
CNT30180865Oryza rufipogonSecale cereale44.7552.4886.25371forward
CNT30288857Oryza rufipogonTriticum aestivum45.629.6586.51378forward
CNT30221752Oryza rufipogonHordeum vulgare44.6355.3187.03370forward
CNT30387693Oryza rufipogonTriticum turgidum45.635.6386.51378forward
CNT30555725Oryza rufipogonOryza glaberrima78.0586.8599.07647forward
CNT30436411Oryza rufipogonAegilops tauschii45.2456.986.67375forward
CNT30248284Oryza rufipogonAvena sativa44.6349.2786.49370forward
CNT30658347Oryza rufipogonTriticum dicoccoides44.9969.0786.6373forward
CNT30136970Oryza rufipogonLolium perenne44.6357.985.68370forward
CNT30648517Oryza rufipogonRosa chinensis26.0642.3586.57216forward
CNT30681645Oryza rufipogonTriticum urartu45.2425.6386.4375forward
CNT30721860Oryza rufipogonTriticum spelta42.9462.0286.24356forward
CNT30351770Oryza rufipogonEragrostis tef40.7734.6385.21338forward
CNT30597241Oryza rufipogonOryza meridionalis72.9869.4698.02605forward
CNT30150944Oryza rufipogonBrachypodium distachyon42.2252.488350forward
CNT30118025Oryza rufipogonOryza nivara73.9452.9898.69613forward
CNT30556975Oryza rufipogonPanicum hallii44.0345.6883.56365forward
CNT30551876Oryza rufipogonOryza brachyantha42.8241.2893.8355forward

Expression of CNT30104669

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 2 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 3 (33 aa)
EHNNYICFLVNSVWKSTNQYRKAFPMNNRSMIF*

Sequence

>CNT30104669
TGAACACAACAATTATATATGTTTTCTTGTGAATTCAGTTTGGAAATCCACTAATCAGTATAGAAAGGCATTTCCGATGAACAACAGAAGCATGATTTTT
TAATTCCATGATCAAATTTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTCGTACCCTTTGTATAAATATATATAG
CCGGAGCTTCCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAAGTCAGAGAGAGATCAGGTGAAA
CAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGCTATATATGACGATGACGGCTTAGTTGCC
ACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATGAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGG
TACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCTGGGTGGCGTCAGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCATCGTAGT
ATCCGGGGGATCTGTGGTTCTCACGGTAGACGAATCCGACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAG
GAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTAAATAAACGATAATTGAATTATTGGT
TAATGTTGAAGAAGAAGAAGAAGAAGAAG