« Back to Oryza rufipogon search


Detailed information on CNT30104668


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578558Oryza rufipogonOryza barthii53.0767.4998.53544forward

Expression of CNT30104668

Peptides detected in this lncRNA

>peptide 1 (58 aa)
KPACALMAREAENGIHDPMKDIFRYLNEEASPYTCVNGNADIVLGADTLMSTKCLIDA*

>peptide 2 (32 aa)
MIISVQGSKGIPVYAGSDLGKDSNNKDSLISS*

Sequence

>CNT30104668
CGAAGCCGGCGTGCGCGCTGATGGCGAGGGAGGCCGAGAACGGCATCCATGATCCAATGAAAGATATCTTCAGATATCTTAATGAGGAAGCATCGCCATA
TACCTGTGTCAATGGTAATGCAGATATAGTACTGGGTGCAGATACCCTAATGAGTACCAAGTGCTTGATCGATGCATGATAATCTCTGTCCAAGGCTCCA
AAGGCATTCCGGTTTACGCTGGCAGTGATCTCGGCAAAGACAGCAATAATAAGGATTCTTTGATTTCCTCGTAAAAGAAGCACATATGGAATTGGTAGCT
TTACTAAAGTTTACAACCGAATTCGATTCTGTAGCATGAAAATAGGAGATCAGAGCGCATCTAGGATTTTGTTAGATTTTGGAGGCTGGTATGCGGAAGG
GGAAGGAGGTGGATAGGACCGGTGTTTATAAATTATTAGAGTGTCACGTGGTGGTTTAGGAGTGTGTGTAGGAGGCCATGTGACAGCTTAGGAGTGTTTA
TAGGGTGTTTCATGGACTTCTAGTGTATAATAGATAGATTGAAAGATATGGTAGAGTTCTAGGATTTAATTGTATAAGAATTTCGGGACCTACTGAATTG
CATAGGATTTAATAGTTATAGGATTGTACAATATTTCTTGTTTTCCCAGTGCAGCCGCACCGCTAGCCCCCTCAGGGGCGGCCCTGTCATTTATCAACTC
AAATAGGAAATATGCAATAAAGGTTTGGGAGCCTCTTACTAGATCGTGCCATCCCACATCGAGCGCTCTCCTCTTCTTGCGCCCTCCAGGATTTGCTTTC
CGACTGAGCCACGCCATCCCACAGCTGAAAGCACATGTCCACACGACGCATACTAACTCCGACGCGCTCCCACATGAACAAGCGTTAGAGCCTACCGTAC
AAGCACACACGATCCCCATACACACAGACATCAAGTGCCACGAAGAAACACATAGGAGAATGGGTGCGGCGCTAGCTAGGATTAACTCAACAGGACCACA
TAATAAATGTTTAGCTAGCTTGCAC