« Back to Oryza rufipogon search


Detailed information on CNT30104665


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002580, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694488Oryza rufipogonOryza sativa11.3623.3593.87163forward
CNT30108025Oryza rufipogonOryza longistaminata17.4922.4397.21251reverse complement
CNT30578086Oryza rufipogonOryza barthii28.5727.8395.12410reverse complement

Expression of CNT30104665

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MHIHTYSCKNILTRSSTNVRTLKRNLQPNIED*

>peptide 2 (38 aa)
MTCLISRIKLIGLKLSYCNMCRPLYSKRTKKFITRSVK*

>peptide 3 (37 aa)
MSDQSSNFSSSDLHMPQNIPTKHHFIGVRTDIGWADH*

>peptide 4 (40 aa)
PTSVPFSVIFLLYTDIFPFACLKQQQTLTKHVNVCKLFSR*

Sequence

>CNT30104665
CCCTACCTCCGTGCCTTTCTCTGTCATTTTTCTTTTGTACACTGACATTTTTCCCTTTGCATGTCTGAAGCAGCAACAAACACTGACTAAACATGTCAAC
GTGTGTAAGTTATTTTCAAGATGAGCCGACAAAATAAAAATTTTGACATTATATCTACTACAGTATGATCTCACACAAAAATAAAGCAAAAACAAGGATG
GATACTGCATTAAAGGCTCTAAAGATTTAAAACTGAAATGCACATACACACATACAGCTGTAAAAACATTTTAACTCGGTCATCGACCAATGTTAGAACA
TTGAAGAGAAATTTACAACCAAATATAGAAGATTAAGTCACTAAGGCTAGGTTGCAGTGGTTCAGAAGCAATGAGTGACCAAAGTTCAAACTTTTCAAGT
TCAGACCTACATATGCCCCAGAACATTCCTACAAAGCATCATTTTATTGGAGTAAGAACAGATATTGGCTGGGCAGATCATTAGCTAGCAAGAAAAATCC
ACTTTGTTTGATTAAAGATCGTTGACATTTGTAGGGGACAGAATGCAGATGTTAGTCGTTCCGTTGTGTTAACAGATATTGGTTTAATTTGTAAATAAGC
ATCCACCACTTTGTTCACAAATGCTCCAAATTTTTCATCAAATAGCATGATAAACACGGTATACATTGCCTTCGTAAGTACCCAAAACTTGAAATGCAGT
TAGCATAATACAGATTTTCAGTTGAGGTCCATTATGTCACAATTATTGTTACGCATATTTTCACCAAATGAGATGTGAGAATTTTGTATTGTCTTATATC
TCTACGTAACGGGATTTGGGATTTGGGTATACATATGCATTTCATCCAACACAAAATGTGGACATACCACCAGATGGAGAAGAGTTAAGCAGGAAGCAAG
CATTAGAATGAATTAGTTTTATCGGCGAATATATTACTCTCAAAGCATCTTTATAACATTGCACCAATAAAAAAATGCCTTAAAAACATGTCCATATGCA
TAATTTAGTCCATCTGTAGCTTATCTCGAGGGATATGACATGCTTAATAAGTAGGATAAAACTAATAGGACTAAAGCTTTCATACTGTAACATGTGTAGG
CCATTATACTCCAAAAGGACCAAAAAATTTATTACCAGGTCGGTCAAATAAAGTTGTTGACATTTTGAGTCAAACACATACACGAGTAAATAACTGTCAA
ACACCACGAGAACCTGGCATGCTCTGGTGTGTAATCAACTAAGAGCACCCACAATAGTAAAGTAAGATGTTGTCTATAAAACATGTACATCTCAGCAATA
GACTAGATTAATAGTAAACCACTTCAATGGTATGTCTACATGGGTATCTATAGTTCTCTAATCCATTGCCTCGTTTTTCTCTATAGACTATCTCCAGGTT
AGTAGATAGCTTTGCTCTCTCTCTTCATTTAATCT