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Detailed information on CNT30104662


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697898Oryza rufipogonOryza sativa34.8968.2199.76412forward
CNT30578571Oryza rufipogonOryza barthii49.773.5698.13587forward
CNT30115821Oryza rufipogonOryza nivara20.4145.8296.27241forward

Expression of CNT30104662

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGYVREEKRSPDPPLPSPPTADPRERGANRRWDM*

>peptide 2 (62 aa)
MGYVREGKRSLDPPLPSPPMPPSPKQPPPIISLESRRMPKSKSYEEESHGDPVSERAGGRRD*

Sequence

>CNT30104662
CTTTATTATCACCAAAGAAAGGAGATTGCATAGCATCTTTAATTGAATAAGTGGTACAGTTACATTTATTTGAAGAATTGCAGCTCTTACAGCTACCAAA
ACCATCGCTGGTCAGAACTCCCAACAAGCAAAGAACACACATCCATATGCCCCGGACCCCCACATGAACATACACAAACAAAATCAACCGATAACGCACA
TGAAATCATGAAGAAACGCCCACTATCTTCAATGGCACCACTCAGCCGCGCTCTCCTCGGTCCACCATCTTGAAAGCTCCTCTCCAGCCAGCCGAACAGC
TAACGGGGAGTCCGCTCTCACAGGATCCGACGGCCATGGCCTCCTCATCAGCAGAACCACAGGTCAACCTTCGTCCGCCATCTTGAAACCTTCTCTCCGA
CCAGCCGGACAGCTACTGGCAAATCTGCGCGAGAGGGGGCGGAGAGATGACGGGATCCATGCGGGAGGGGAAGTGGTCACAAGATCCGACGCTCCCGTAG
CTGCCGATGGCTGATCCATGCGAGAGGGGGGCGGAGAGATGACGGGATCAGCGTGGGAGGGGAAGAGGTCGCCGGATCCGCCCCTCCCATAATCGCCGAC
GGCGGATCCGCGCGAGAGGGGGGGGGGGAGGGGGGCGAACAGACGACGGGATCAGCGCGGGAGGGGAAGAGGTTGCTGTATCCGCCCCTCCCATCGCCGC
CGACGGTGGATCCGCGCAAGAGGGGGCGAACAAGCGATGGGATATGTGAGGGAGGAGAAGAGGTCACCGGATCCGCCCCTCCCATCGCCGCCGACGGCGG
ATCCGCGCGAGAGGGGAGCGAACAGACGATGGGATATGTGAGGGAGGGGAAGAGGTCGCTGGATCCGCCCCTCCCGTCGCCGCCGATGCCGCCATCACCA
AAACAGCCACCACCGATCATTTCGCTGGAGAGCCGCAGGATGCCCAAATCCAAGTCCTATGAGGAGGAAAGCCATGGGGATCCAGTGAGTGAGAGGGCAG
GAGGGAGGAGGGACTGAGGGAGAGAGTTGTTTGGTCTGGGTGAGTGGGAGGGGAGGAGGGAGAGTCAAGGAGAGACCGTTAGAGACTGGGAGAAATATCA
TCGGAAGAGACGAGAGACTCTTGCTGTTGCTTTCTTATTTTACCCTCCCTGTTGACTTTACTTCCATTGCTTTATTTTTTT