Detailed information on CNT30104659


BLAST search results

BLAST vs Swiss-Prot:
sp|B8BM09|DMC1A_ORYSI, E-value = 1e-41

BLAST vs NONCODE:
NONORUT002023, E-value = 8e-178

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3071898Oryza rufipogonQuercus suber36.9847.9981.56179forward
CNT30224824Oryza rufipogonHordeum vulgare44.2138.8488.32214forward
CNT3068273Oryza rufipogonLeersia perrieri97.5262.4388.98472forward
CNT30371297Oryza rufipogonOryza glumipatula63.6487.2583.77308reverse complement
CNT30105029Oryza rufipogonOryza longistaminata94.0198.790.77455forward
CNT30578572Oryza rufipogonOryza barthii96.4999.7999.57467forward
CNT30582636Oryza rufipogonEchinochloa crusgalli44.2144.0389.25214forward
CNT30496955Oryza rufipogonDigitaria exilis44.2147.5686.92214forward
CNT30118011Oryza rufipogonOryza nivara81.499.4999.49394forward
CNT30593120Oryza rufipogonEragrostis curvula34.559.0190.42167forward
CNT30604793Oryza rufipogonOryza punctata73.1476.4690.68354forward

Expression of CNT30104659

Peptides detected in this lncRNA

>peptide 1 (36 aa)
GESYHHVNLLYIFHLRQYCICFSTTVDLISIEKYPF*

>peptide 2 (73 aa)
MNIQSFASIIPPDVTWKTSSPSGRLGASKILQTRCSPLPFLSINRMVAACASTWPPAGFFRSVMNIPPPGSAIT

>peptide 3 (30 aa)
MQEFTRRNLNNLKTGSTLNEHSVFRIHYST*

Sequence

>CNT30104659
CTGGGGAAAGTTACCATCATGTAAACCTCTTATATATTTTTCACTTAAGACAATACTGTATTTGTTTCAGTACAACTGTTGATCTCATAAGCATAGAAAA
ATACCCATTTTAAGGTATAATCGTCTGGATAAATGAGGTTGCATATTTCCTCGACAGTGGCAAAGTAGCAGTAGTAGTTTAGTCAATGTACCAAACCTAT
ATGGCCTATGCAGGAATTTACTAGGAGAAACCTGAATAATTTGAAGACAGGAAGCACCCTCAATGAACATTCAGTCTTTCGCATCCATTATTCCACCTGA
TGTTACCTGGAAAACGTCTTCTCCCTCAGGCAGGTTAGGGGCATCAAAGATCTTGCAGACACGCTGCTCTCCTTTGCCTTTCCTCAGCATCAACCGGATG
GTAGCTGCATGCGCCAGCACGTGGCCTCCCGCTGGTTTTTTCAGGTCAGTTATGAACATTCCACCACCTGGGTCGGCAATCACT