Detailed information on CNT30104631


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL2|NLT2B_ORYSJ, E-value = 3e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697724Oryza rufipogonOryza sativa56.3226.63100196forward
CNT30555885Oryza rufipogonOryza glaberrima57.4718.3896.5200forward
CNT30470737Oryza rufipogonSaccharum spontaneum56.0350.1388.21195forward
CNT3068317Oryza rufipogonLeersia perrieri53.7437.486.63187forward
CNT30352811Oryza rufipogonEragrostis tef54.8925.684.82191forward
CNT30578263Oryza rufipogonOryza barthii57.4719.6599200forward

Expression of CNT30104631

Peptides detected in this lncRNA

>peptide 1 (94 aa)
GAVDGGADGVGDADAALGGDAGGIAGVEAPDAAAAGRRRAGAAAGVAEAGRHGGVDLAAADGGHGGVWARQEQSCHEGDQHQLCTGHLDLGRVC*

>peptide 2 (34 aa)
MLTPHLEGMLAALPALRLLTPLQQAADGPEPPRA*

>peptide 3 (54 aa)
MAAMVVCGPARSRAATRATNTSCARAISILVVCADDRSTLLLLLVCGARLLLQVR

Sequence

>CNT30104631
CTGGAGCAGTCGATGGAGGGGCTGATGGTGTAGGGGATGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCATTGCCGGCGTTGAGGCTCCTGACGCCGC
TGCAGCAGGCCGCCGACGGGCCGGAGCCGCCGCGGGCGTAGCTGAGGCAGGGCGACACGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCATGGTGGT
GTGTGGGCCCGCCAGGAGCAGAGCTGCCACGAGGGCGACCAACACCAGCTGTGCACGGGCCATCTCGATCTTGGTCGTGTGTGCTGACGATCGATCGACT
TTGCTGCTGCTGCTGGTGTGTGGTGCTCGTTTGCTGCTGCAGGTGAGA