Detailed information on CNT30104589


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36450|NDUS2_NICSY, E-value = 4e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30232940Oryza rufipogonAnanas comosus48.1752.2498.57210forward
CNT30484721Oryza rufipogonChara braunii53.6718.6884.62234forward
CNT30574471Oryza rufipogonVitis vinifera30.7342.9595.52134forward

Expression of CNT30104589

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MGRPTTSLFHFHLGPGQVSGGTLSGSFPPKTNCTWEFPFIRLESFSDATRGIFPYDLVVHTR

>peptide 2 (30 aa)
MNIVRCCSSRIPAYPRLGWVGPPLHFFTFT*

Sequence

>CNT30104589
GATTCCATGGATAGTTTCATTCGAGATCGTGATGGAGGACATAGCTTACGATCATCGGCTTTGATCATGCCACTAGGCATTTGATTAGGACATTGCACAA
TGATCCGAACACTTTGTCGCATCTCTTCGATACGGATACAGTAACGATCATAGCGATCTCCTCTGGTACCTACTGGTACGTCAAGATCCGATTGGTCATG
AACATCGTAAGGTGCTGCTCTTCGCGAATCCCAGCATACCCCAGGTTGGGATGGGTAGGCCCACCACTTCACTTTTTCACTTTCACTTAGGCCCGGGCCA
AGTCAGTGGGGGGACCCTATCGGGCTCCTTCCCCCCCAAAACAAACTGTACGTGGGAGTTTCCCTTCATACGGCTCGAATCATTCTCAGATGCCACGAGA
GGCATCTTTCCTTATGATCTGGTGGTTCACACGCGC