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Detailed information on CNT30104570


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9GCB9|RT02_ARATH, E-value = 2e-10

BLAST vs NONCODE:
NONORUT002288, E-value = 3e-173

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30220384Oryza rufipogonHordeum vulgare11.2643.5993.28119reverse complement
CNT30441767Oryza rufipogonAegilops tauschii22.9935.3793.83243forward
CNT30619669Oryza rufipogonCajanus cajan22.4252.5589.03237forward
CNT30596078Oryza rufipogonOryza meridionalis39.6452.3199.52419forward

Expression of CNT30104570

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLVSVSLSLLEESKAGKKSSYFHTLSLDNPHQEDSNPC*

>peptide 2 (42 aa)
MQTGLKAVDSLVPIGRGRRELIIGGRKTSICSATSRVTKTQSI

>peptide 3 (32 aa)
MILYSSYIYFVIRSRKQGFWNVNLCTNPCKQA*

Sequence

>CNT30104570
GATTCCGTATCTAGTTTGTGTCTTATTATTAAACTATTTTATTTGGTGTGGTGGAGAAGAAAAATGAAACCGCGCGATTGAATCCACAATTTGACTGAGG
ACAAGACGCGCTGCTAATGCTAGTTTCAGTAAGCCTGTCTCTTCTAGAGGAAAGCAAAGCTGGTAAGAAGAGCTCCTATTTTCATACTCTAAGCTTGGAT
AATCCGCATCAAGAAGATTCGAACCCCTGCTAGAGCCAAAGTAATGAGAAAATGACTTGTCACTGTGAAGCTAAAGGGTATCATACCCTGGGGATTACGA
AATAACGAAAAAGTAAAAGTGACCGAGATGCGAGGGAAAAACTTTTGTTTAACATTTCCACCTATTTGTTCGTTTACCAGGTTCAGCACGAAATCATAAA
TAAGCTCTACCAAGGATTGCCATGCATTTGGCACTGACTTTCCCCCGCCCTTTTTCGTAACAACTCCAAATAAAGATGGCACCAAAACGACAGTTACCGC
CATAGACAAGGATTCATTTGTGAATGATAAATAAAAGTTACCCATATCAAGACCAAATAATGGATCAATGAAAAATTGATCCAAGGGGCTTGAAATTACT
GGTCCGCCGCCTCCAGGGATAACTATATCGCCATTCCTCCATTCAGCCCGTCCCTTCCTTCCCGGAAAAAGGCTCTCTTGCATCTTTTGCTTCCCAACCC
GGCCTCTATTCTAGATTCACCGTCTTTGGATGCATCAGTTTATTATGCTTGGAAGCTGCTCGATCACAAATACCTATTGCATTCTTAGTTGATTCCACGA
TCCCAGGGGAATCCCATAAAAGAATCACTTATCCCATCCCAGCGAATGATCCTATACAGTTCGTATATCTATTTCGTCATTCGGTCACGAAAACAGGGAT
TCTGGAACGTAAATCTGTGCACGAACCCATGCAAACAGGCTTAAAAGCAGTGGATAGCCTGGTTCCTATAGGCCGTGGTCGACGAGAACTTATAATCGGG
GGCAGAAAAACTTCAATCTGTAGCGCTACTTCCAGAGTTACCAAAACTCAAAGTATC