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Detailed information on CNT30104562


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596705Oryza rufipogonOryza meridionalis26.0410097.26219forward

Expression of CNT30104562

Peptides detected in this lncRNA

>peptide 1 (29 aa)
HDGDLLVSTWASLRSRPGETWLPGLRVRV*

>peptide 2 (47 aa)
MQEKMRAIMRVFSCRSAVDVVPPAGPVQPRPRAPTVGAGPRPTAPVSH

>peptide 3 (83 aa)
TMGTYWCRRGRRYAHVQVRRGYPDFVFAFDRLQPSDVIWEPYTEEAVAARAPLGLSSLCTRDQTYWLTILPMVFDIFVEPHCP*

Sequence

>CNT30104562
CCACGATGGGGACTTACTGGTGTCGACGTGGGCGTCGTTACGCTCACGTCCAGGTGAGACGTGGTTACCCGGACTTCGTGTTCGCGTTTGACCGTCTCCA
GCCGAGCGACGTCATCTGGGAGCCGTACACAGAAGAGGCCGTCGCTGCGAGAGCACCGCTAGGACTTTCGTCCTTGTGCACACGCGACCAGACTTACTGG
CTCACCATCCTGCCGATGGTGTTCGACATTTTCGTTGAGCCTCACTGCCCGTAGCGTGTGATAAGACAGTTCGGACTTAGGCAGGTGTTTCCGGGCAACG
TGCAGCCGACCGTCCTCCCTGCCGACCACTCGTTGACTCGACGGGGACAGCTAGCAGGCGTACTTTGGGCTCCACGTGTACAGCAGTACGTTGACGACTG
GGTGTTAGCTACAGAGGAGGTGATCAACGAGCTCTTCCCACACACGGAGGAGAACTACCGTGACTACCTTCGCTGGTACCTTCCTCGCACTCGGGCGCGT
GTGACCTTCACTACAGACGCCCCAGAGCCGCACGTTGCCGCTGTCACGGACGCGTATCCCACGCACCGTGACCGAGACTACTTCGTGGCGGCTGATGCCG
CACGGGATATCAGTGCCGATATCACAGCAGTCCAGGTGAGGTTGAACAGAGGTTTGCACTTGACTGACGTTGAGCAGAGGGTGACCTTCGACCGGATGCA
GGAGAAGATGCGTGCGATCATGCGCGTCTTCTCCTGTCGCAGCGCCGTGGACGTCGTACCTCCAGCTGGTCCGGTACAACCACGGCCTCGCGCGCCTACC
GTCGGAGCAGGACCTCGACCTACGGCACCTGTTTCGCACGG