Detailed information on CNT30104556


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521203Oryza rufipogonSetaria italica52.3815.5186.71143forward
CNT30186232Oryza rufipogonSecale cereale34.4314.5793.6294forward
CNT30221053Oryza rufipogonHordeum vulgare34.0712.9587.193forward
CNT30135654Oryza rufipogonLolium perenne27.4735.3886.6775forward
CNT3067646Oryza rufipogonLeersia perrieri22.7130.195.1662forward
CNT30597223Oryza rufipogonOryza meridionalis78.027199.53213forward
CNT30371494Oryza rufipogonOryza glumipatula10039.8596.7273forward
CNT30150857Oryza rufipogonBrachypodium distachyon28.2114.8694.8177forward

Expression of CNT30104556

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHLILPPLVMSPKPELVERRLTGRPAVDLSPWNGATEVAEEAITVGAIAT*

Sequence

>CNT30104556
ATGCACTTGATCCTTCCGCCGTTGGTGATGTCGCCGAAGCCTGAGTTGGTGGAGCGGCGGCTCACTGGGAGGCCGGCGGTGGACTTGAGCCCCTGGAATG
GAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGTTAGCTAGCTTACTGGCTAGTAGTAGTAGAGTATGTCCAGTAG
CAGTGCTGTTGAGGCCCTGTACGCTGGTTCACCAGCAGCTTATATAAACAGCAATCGTATCATGTCATTTCAT