Detailed information on CNT30104555


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697529Oryza rufipogonOryza sativa35.863.35100261forward
CNT30166677Oryza rufipogonPistacia vera12.3521.6384.4490forward
CNT30436158Oryza rufipogonAegilops tauschii8.2320.1393.3360forward
CNT30658022Oryza rufipogonTriticum dicoccoides8.2322.2293.3360forward
CNT30680368Oryza rufipogonTriticum urartu8.2322.8193.3360forward
CNT30349481Oryza rufipogonEragrostis tef13.3123.2191.7597forward
CNT30597167Oryza rufipogonOryza meridionalis55.5665.5399.51405forward
CNT30371436Oryza rufipogonOryza glumipatula91.9191.4192.69670forward

Expression of CNT30104555

Peptides detected in this lncRNA

>peptide 1 (93 aa)
NIRCMIRNQSEIDESRENSLQISTQMIQIHSEHDKRSIMHAVVSYHKGSRYRNVFMAGQSIDDHHQIITISRRRWIRTCTSPSPRTRSRDHLR*

>peptide 2 (66 aa)
MRPSAWRGTRRTRRPWPARRRWRRTRRRDPAARRACHRPAPPWAAQRRARASAPARRPTAAPPRRA*

>peptide 3 (52 aa)
MQLCHITKVLGTGMFSWLANRSMIIIRSSPFPEDVGSALVLLLPLALDLEII*

>peptide 4 (55 aa)
MNGTFCTQQHKRFQIKSCSTLVRSIKNQSSIDVIHPERGLVFDRMKRVEFVKVMK*

Sequence

>CNT30104555
CAATATAAGATGCATGATTAGAAATCAAAGTGAGATCGACGAATCGAGAGAAAATTCGCTACAAATCTCCACTCAGATGATACAAATACACAGTGAGCAC
GACAAGCGTTCAATTATGCATGCAGTTGTGTCATATCACAAAGGTTCTAGGTACAGGAATGTTTTCATGGCTGGCCAATCGATCGATGATCATCATCAGA
TCATCACCATTTCCAGAAGACGTTGGATCCGCACTTGTACTTCTCCTTCCCCTCGCACTCGATCTCGAGATCATCTGAGATGAATGGGACTTTCTGCACG
CAACAACACAAGAGGTTTCAGATTAAATCATGCAGTACTCTTGTTCGTTCCATAAAAAACCAATCTAGTATAGATGTGATACATCCTGAACGAGGTTTGG
TTTTTGATAGGATGAAGAGAGTGGAATTTGTGAAAGTAATGAAGTGATGAGACCTTCTGCTTGGCGAGGTACTCGTCGAACACGCCGGCCTTGGCCTGCC
CGGCGGCGGTGGCGGCGAACACGGCGGCGAGACCCAGCAGCGCGGCGCGCCTGCCACCGCCCTGCTCCTCCTTGGGCGGCACAGCGACGTGCACGCGCTT
CGGCACCGGCGAGGCGGCCGACTGCGGCACCGCCGCGGCGGGCTTGAGGCCGACGACGCTGGTGCTCACTCCGGCCATGGCTCGAGCTGCGCGTGTGCAA
GAATTTGGTTGGTTGGAGACGACGACCAG