Detailed information on CNT30104554


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697690Oryza rufipogonOryza sativa83.7377.6899.44355reverse complement
CNT30118098Oryza rufipogonOryza nivara70.9971.33100301reverse complement

Expression of CNT30104554

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MNRQSYEDQHTRRITILAHPTIQASAKNKCIAPLSMA*

>peptide 2 (36 aa)
MHCTVEHGITNVNGCIWGLGSCVAPIHDLAAGFVTF*

>peptide 3 (62 aa)
MIWLPALLPFSTGAIVPHTATVHCRFDCTRPSARERECELGTKGEDGGRRSCWESRGRRGRAA

Sequence

>CNT30104554
CAAAATTTGAACCATCATTAGAAAATTTGAGGCAATTTGTTAACAACCAATAGATAAAACAGAAAAAAATGAATAGGCAATCATACGAGGATCAACACAC
AAGGAGAATTACAATATTGGCACATCCAACTATCCAAGCATCAGCGAAGAACAAATGCATTGCACCGTTGAGCATGGCATAACCAATGTTAATGGGTGCA
TCTGGGGACTAGGCAGTTGTGTTGCCCCTATCCATGATCTGGCTGCCGGCTTTGTTACCTTTTAGCACCGGCGCCATTGTTCCGCACACGGCCACCGTCC
ACTGCAGATTTGATTGCACGAGACCATCAGCAAGGGAAAGGGAATGCGAATTGGGGACTAAGGGAGAAGATGGAGGGAGAAGATCGTGTTGGGAAAGCAG
AGGACGACGGGGTCGTGCTGCTCC