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Detailed information on CNT30104545


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226404Oryza rufipogonHordeum vulgare9.6328.2591.52224reverse complement
CNT30596084Oryza rufipogonOryza meridionalis96.1342.8399.62236forward

Expression of CNT30104545

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MQRNKRVWDSHVKAFIDNYYFFVSCVASKNG*

>peptide 2 (67 aa)
DHCLGAHTSSSSTTICDLLFPEFRTPRVAPCRSPPPRCCRGERPYSRLVEIDASPRPLLYRESSGWF*

>peptide 3 (48 aa)
LTTASEPIQALLQQPYVTFFSPSFEPLGLHHVDLLLLVVAVEKDRIHV*

>peptide 4 (64 aa)
MQVLGRYYTENRPDGFELDCLPESMRHSTQLKNSLPPGFFARHRALWRLSVKSVHRPWSFPISF*

Sequence

>CNT30104545
TTGACCACTGCCTCGGAGCCCATACAAGCTCTTCTTCAACAACCATATGTGACCTTCTTTTCCCCGAGTTTCGAACCCCTCGGGTTGCACCATGTAGATC
TCCTCCTCCTCGTTGTTGCCGTGGAGAAAGACCGTATTCACGTCTAGTTGAAATAGATGCAAGTCCTCGGCCGCTACTATACCGAGAATCGTCCGGATGG
TTTTGAGCTTGACTGCTTACCTGAAAGCATGCGGCACTCAACTCAGCTGAAGAATTCACTTCCACCCGGGTTCTTCGCGAGACATAGGGCACTTTGGCGG
CTATCGGTGAAGAGTGTGCACCGTCCTTGGTCCTTCCCCATTTCCTTTTGATCGTATTACGCTGCAAAACATTTCGCTTTCTGCGCTCGCTCGTACGTGG
TTTACACTCCTTGCCTTTCATCTGACTTTGCCATCGGGCAATTGTTTGTTTTCAACTGGATTGGATTCCGAACCAAGAAAGATAGGCAACTTTCACTTGA
AAGAAAGGAGCTTCAGAACTATTGTATTCCACCGAATAAGAATAAGAGCAAGAAGGGGCTATCTTTGTGAAGGGACCGGCACCAGAAAGTAGATCATATG
GCCTTTCTTTCGCCAAAAAAAATAAAGTAAAGCCCCGGCCCAAGAAATGCAGCAAAGCAAGTCGTCTTTGGTTTGGAAGAGAGGATGTGCTTTCCGCATT
GAAGTTAAGGATTGAATGAATTAATTGTCCGAAACCCTACTTGTGAATGAATGTCTCCTGTCCTTTGGCATCCCAGTGAAGAAGTTGACTTACTTCCGAA
TGAAGCGAACTCTGAATAAGGTTTTCAGATCGACCAAAAAATATATTATTTATTGTAAGTGAACGGAGAAAAAATCCAAAGTCTTTTAAATAGGACGGAC
AGGCTGCTCCCTCTTGAGGTTGCAGGATCTGTAGTGACATCTTCTCCTGATGTGCAATTGGAGGCACTTGTGCTAGTTGCTGCATCTTCACCGATATCAT
TTATATTTCCATCTTCCTGCACTTGGTTGACAAACCCTGAAACCATAACACAGATTTCAATCTGCTCTTGGAAATCCTCGAAACCCATTCCATATCCAAT
CTTTGGACTACCACCCATATCTCCTACTATCGACCCACCACTGGATAAGCGAAGAAGTACTGCGAGGAGTTTTCAATTCACTAGCCGAACAAAGATCCTT
CAATGCAAAGGAACAAAAGGGTATGGGATTCTCATGTCAAAGCATTCATTGATAACTACTACTTCTTTGTTTCATGTGTTGCATCCAAAAATGGTTAATT
AAGTAATAGCATTTATATTACCAATTTGCTTTCAACTCTTATTGAAAAAAGCTCCGACCTTGGCTGTTTAGCAGTACATCCATAACTCCGAGCTTGAAAG
TTTAGCAGTACACCCATAAGTGAATCCGGAAGTAACGTAGTACAGGGCGTAGCTCAATCTTCTCTCGCTGGATCCCAACCTAAAAGTAGCTAAGAGTTTT
CCGGGCCTAATCTAAAAGATAGCATAGAGTTGTCAGTTTAAGTAGCTCCCCTTTTCCCGAGTGCGGGAGTCAGAGCATCCATTTCATTCGTTTAGGTGGG
GAAGAGGAAAAGCTAGACAAGCTTGCAATCGATCAGCTGCAAGTTCTTCGAACTTATAATAGCGGGAATCTGGTCATTGATCCAAAGCTCACAAAGAGAT
AACAAACCAAACAATTCATAGGAGTCCCCCACTAGTGCCGGTTTGACATCCACTCCAGCAGCGCACCAAGAGAATCAAGTCAGTGGTAGTTATATAAGTC
ATCTCCGACGAAACAATCATCCACTACTTCAATACTGGCTTTTCGCCCCAGGCCTCCCTCTTTGGGAGCAGTTCGTGTCGTAAGATGTCAGGTTGAGTCC
GCCAACGAACGCAATCCCTAGAATCTGTTTTGATCTTATTATTTGCTTTCAATAAGAAGCGGGAGATAAGCCTTCATGACTGCAATTTCCAGCCGGGAAA
GAAGATCAAGGCCACTGCTTTTGAGCCGGTACCCACCAAAAATCATATAGAGTGTAGTTTGTCAACTCAAACTTTCCTGGCTTCATTTCCCATTGTCATT
TCTTTTTCCAAAAACTCATTTGCTAAGTAGAATAGTTAAAATTCATGCTCTGCTAGAGCAAACACACTTCTCGGGATTGATGTCGTCTCCGTCTACTTTT
TCTCTTAACTCACTCAGAGAGAGAGGCCGCCAAGGATAAAAATTATTAAAGAGAGTACCAGACAAGAGGTAGTTGTGTGGTTCTATTATTCGTTCAGTGT
ATTATTCGGGAATTGGTTTGGAAAGC