Detailed information on CNT30104540


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002083, E-value = 5e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697925Oryza rufipogonOryza sativa41.6449.37100117forward

Expression of CNT30104540

Peptides detected in this lncRNA

>peptide 1 (47 aa)
REPLHRHHKSNTHQNQPNQYKSRSREKEGGLPTYLVLEHVSGSGTAA*

>peptide 2 (52 aa)
GSRCIATTNPTRIRTNQISTNPDRERRREGCRPTSSLSMCRARGRRLEVAAS*

>peptide 3 (37 aa)
AGAAASPPQIQHASEPTKSVQIPIEREGGRAADLPRP*

Sequence

>CNT30104540
GCGGGAGCCGCTGCATCGCCACCACAAATCCAACACGCATCAGAACCAACCAAATCAGTACAAATCCCGATCGAGAGAGAAGGAGGGAGGGCTGCCGACC
TACCTCGTCCTTGAGCATGTGTCGGGCTCGGGGACGGCGGCTTGAGGTGGCGGCATCTTGAGGTGGACGGCGGCTTGAGGTCGTCGGTGTCTTGAGGTGT
CGGCGGGCTCCGAAATCCGCATCTGCACACGCGTCAACTCCCCGACGGTCGCCGGCCACCGCGGCGGCGCCGACTTCGCCC