Detailed information on CNT30104537


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223386Oryza rufipogonHordeum vulgare39.6711.8599.17121reverse complement
CNT30389925Oryza rufipogonTriticum turgidum39.678.6197.52121reverse complement
CNT30592666Oryza rufipogonMusa acuminata39.3412.3391.67120reverse complement
CNT30541981Oryza rufipogonBrassica napus40.987.7992125forward
CNT30171414Oryza rufipogonTrifolium pratense32.4628.4586.8799forward
CNT30452541Oryza rufipogonSaccharum spontaneum26.234.8692.580reverse complement
CNT30655399Oryza rufipogonRosa chinensis40.9815.5792.8125forward
CNT30207123Oryza rufipogonHelianthus annuus26.5631.6496.381forward
CNT30683092Oryza rufipogonTriticum urartu39.675.4799.17121reverse complement

Expression of CNT30104537

Peptides detected in this lncRNA

>peptide 1 (73 aa)
EPCDGKPSRTVRRALKTNERFTTTSLQGELARFADWSDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX*

>peptide 2 (77 aa)
MRGSPPHHCKGSSLDSQIGLTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERFTTTSLQGELARFADWSDS*

Sequence

>CNT30104537
GTGAGCCGTGTGATGGGAAACCTTCCCGCACGGTTCGGAGAGCACTGAAGACGAATGAGAGGTTCACCACCACATCATTGCAAGGGGAGCTCGCTCGATT
CGCAGATTGGTCTGACTCGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGAGAGGTTCACCACCACATCATTGCAAGGGGAGCTCGCTCGATTCGCAGATTGGTCTGACTCGTAATTCACTTTTGAC
TCCGT