CANTATAdb - search

Detailed information on CNT30104531

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697749	Oryza rufipogon	Oryza sativa	35.62	67.66	99.45	182	forward
CNT30555603	Oryza rufipogon	Oryza glaberrima	97.46	97.46	99.8	498	forward

Expression of CNT30104531

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MTIILFVTVGALISSFMCCFSNSGHFCILYIYRSLHPHQNLISKVLQLRSSRKDMTGN*

>peptide 2 (52 aa)
MYLSNHQVSSQEKVILPQFYDYYLICYCWGIDIFLHVLLQQFRSFLHFVYLS*

Sequence

>CNT30104531
CAAACACATGCATTTTCAGTACTCAAACATTGATTTGATAGTCTGAAATTACATCTTATATAAGTAAAACTTTGAGCTGAAATGTATCTTTCTAATCACC
AGGTTTCAAGTCAAGAAAAAGTAATTCTTCCACAATTTTATGACTATTATCTTATTTGTTACTGTTGGGGCATTGATATCTTCCTTCATGTGCTGCTTCA
GCAATTCCGGTCATTTTTGCATTTTGTATATCTATCGTAGCTTGCATCCTCACCAAAATTTGATTAGCAAAGTGCTGCAGTTAAGAAGCTCAAGAAAAGA
CATGACCGGTAACTGAAGAAAGGTGGAGATGTTCTTTTCCTTTTGGCATTGGTTCAGATTAGCAAAATGCTGCAGTTAAGAAGCTCAAGAAAAGACATGA
CCAGTAACTGAAGAAAGGCGGAGAGAGGTTCTTCTTCTGTTTCTTGGTTCGCTCTCTCTGCCCACACTGCAAGAGTGCCACCAATATCGGGCAACCCTCA
CCGTGTGACCT