CANTATAdb - search

Detailed information on CNT30104527

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697490	Oryza rufipogon	Oryza sativa	93.64	77.7	100	648	forward

Expression of CNT30104527

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MKTSQKMQFNTWRMLFCAMCTFLVEIPVRTSHICIFLYNCSLFSCAQAAYFCFRLQSARKMELGEHSLE*

>peptide 2 (32 aa)
MRCNRNPLIMLRTSGTEIWTTVYRVSIGKSQQ*

>peptide 3 (35 aa)
RNTSASRGLVPNKYTHTLLIDENCKEGNWAGCQGL*

Sequence

>CNT30104527
ACGCAACACCTCTGCTTCCAGGGGATTGGTGCCAAACAAATACACTCACACTTTGCTGATAGATGAGAACTGTAAAGAAGGTAACTGGGCAGGGTGCCAG
GGTCTATAAGGCTGTATTCTGAAATGCATCAGAATGATATTCATCCAGATTATTGATTGCACATAATGCCTTGTTTAAGGATTTGATGAAGACCAGTCAA
AAAATGCAATTCAATACTTGGAGAATGTTGTTTTGTGCCATGTGTACTTTTTTAGTGGAAATCCCTGTAAGAACATCTCATATATGCATATTTCTGTACA
ATTGTTCATTATTTAGCTGTGCTCAGGCAGCATATTTTTGTTTTCGTCTTCAATCAGCAAGGAAGATGGAGCTTGGGGAACATTCTCTTGAGTAAAGAAG
TTGGGTTCTTTCCAGACAGATAGTACATTCCTTCTATGTTGCCTTCTATTTTTTGTAAATTTTTTTCCTTGGTCTCATGTTCATGAAGAAACAGTTCTCC
ATTGATCTTCTCTTTTGATGAGGTGTAATAGGAATCCCTTGATCATGTTGAGAACATCTGGGACTGAGATTTGGACAACAGTATATAGGGTTTCTATTGG
TAAAAGTCAACAATGATTCGTTGAAATGATTAATGCTTGTATAAGTGACAATTTTGCATATGCACCTGGCACATGCATTGGCTTGTCAGATA