Detailed information on CNT30104515


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697771Oryza rufipogonOryza sativa64.9810099.69321forward
CNT30677224Oryza rufipogonSetaria viridis11.7425.7887.9358forward
CNT30296412Oryza rufipogonTriticum aestivum30.7733.9386.18152forward
CNT30391100Oryza rufipogonTriticum turgidum30.9725.1684.97153forward
CNT30438855Oryza rufipogonAegilops tauschii30.7728.2584.87152forward
CNT30663481Oryza rufipogonTriticum dicoccoides30.3628.5786150forward
CNT30118046Oryza rufipogonOryza nivara79.1510099.49391forward

Expression of CNT30104515

Peptides detected in this lncRNA

>peptide 1 (34 aa)
STSFFITQPIQIMVPAFAAPAQPNNHPSSYPIVT*

>peptide 2 (42 aa)
MPGIPIGGGGPPIPGGAGKARGSNWAYMFCTIQCNTTRHAAY*

>peptide 3 (63 aa)
MNSSQVDDNSVASHWRHPICWHRSGTHRRHARHPHWRWRTAHTRRSRQGKRKQLGIHVLHHTM*

Sequence

>CNT30104515
GTCTACAAGCTTTTTTATCACACAACCTATACAAATAATGGTACCAGCCTTTGCAGCTCCCGCTCAACCTAACAACCATCCCTCATCCTATCCCATCGTA
ACATAATATATATAGCAACCAGCAATTAACTCGACCTGGCTAGAGATTTCACTCGCCAAAATTGTCCTGGTACCAAAAGAATCAGTTTAAACAACCAATA
ATAGCACATCTACAACTTGAAAGATGCCTCCTCTTCTGTGTAAATTGAAATTCTTATCTAAATGAACTCTTCACAAGTGGATGATAACTCAGTAGCTTCC
CATTGGAGGCATCCCATATGCTGGCATAGGTCCGGGACCCATCGGAGGCATGCCCGGCATCCCCATTGGCGGTGGAGGACCGCCCATACCAGGAGGAGCA
GGCAAGGCAAGAGGAAGCAATTGGGCATACATGTTCTGCACCATACAATGTAATACCACTCGTCATGCTGCCTACTAAATAATAACAGAATAAT