Detailed information on CNT30104484


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678383Oryza rufipogonSetaria viridis45.3235.3897.52121reverse complement
CNT30504983Oryza rufipogonNicotiana attenuata30.344.4598.7781reverse complement
CNT30221870Oryza rufipogonHordeum vulgare10021.5595.88267reverse complement
CNT30234810Oryza rufipogonBrassica oleracea98.534.7492.02263forward
CNT30659576Oryza rufipogonTriticum dicoccoides10035.697267forward
CNT30229838Oryza rufipogonAnanas comosus98.8859.5995.08264forward
CNT30218527Oryza rufipogonKalanchoe fedtschenkoi98.8817.7396.21264forward
CNT3067373Oryza rufipogonLeersia perrieri64.7957.2897.69173reverse complement
CNT3037914Oryza rufipogonCucumis melo98.8812.4186.74264reverse complement

Expression of CNT30104484

Peptides detected in this lncRNA

>peptide 1 (50 aa)
RSFVDLRISPLHTKFHSPLSHSSELVSRAFRHFLVTFTFNPIHRLRALYA*

Sequence

>CNT30104484
GCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGTGAATTGGTTTCAAGAGCATTCCGCCACTTT
TTGGTGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCTAGTCATTCCGAAGAACACTTGCCCCCCCCTCCCATCTTACCGCGGCTG
CTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCT