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Detailed information on CNT30104475


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 9e-23

BLAST vs NONCODE:
NONORUT002251, E-value = 1e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Oryza rufipogonSetaria italica27.9413.4888.54157forward
CNT30639598Oryza rufipogonNymphaea colorata24.7323.2882.73139forward
CNT30533654Oryza rufipogonEucalyptus grandis24.9128.5787.86140forward
CNT30549812Oryza rufipogonIpomoea triloba25.827.282.07145forward
CNT30514302Oryza rufipogonJuglans regia23.4923.1290.15132forward
CNT30275526Oryza rufipogonChenopodium quinoa25.4425.9185.31143forward
CNT30180424Oryza rufipogonSecale cereale26.6923.1892.67150forward
CNT30221624Oryza rufipogonHordeum vulgare26.6922.1292150forward
CNT30386243Oryza rufipogonTriticum turgidum26.6922.1692.67150forward
CNT3084841Oryza rufipogonVigna radiata23.6724.9183.46133forward
CNT30249706Oryza rufipogonAvena sativa26.6923.1594150forward
CNT30467515Oryza rufipogonSaccharum spontaneum26.8720.5291.39151forward
CNT30135597Oryza rufipogonLolium perenne26.6929.0193.33150forward
CNT307034Oryza rufipogonZea mays27.0519.2690.13152forward
CNT30624138Oryza rufipogonDaucus carota25.0926.4585.11141forward
CNT30346089Oryza rufipogonEragrostis tef25.9825.9891.1146forward
CNT30597257Oryza rufipogonOryza meridionalis88.6199.899498forward
CNT30355824Oryza rufipogonLactuca sativa25.4418.3381.12143forward
CNT30371492Oryza rufipogonOryza glumipatula85.5989.5799.17481forward
CNT3053146Oryza rufipogonAmborella trichopoda24.7322.0682.73139forward
CNT30108688Oryza rufipogonOryza longistaminata38.7938.86100218forward
CNT30578401Oryza rufipogonOryza barthii88.0888.5599.6495forward
CNT30581754Oryza rufipogonEchinochloa crusgalli27.9420.5291.08157forward
CNT30118085Oryza rufipogonOryza nivara95.55100.5699.26537forward
CNT3065513Oryza rufipogonSelaginella moellendorffii8.3620.793.6247reverse complement

Expression of CNT30104475

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PRAALIQKAASRAYNLHPSTPVSGHPVKP*

>peptide 2 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKEQRPKASENKPVMNE*

Sequence

>CNT30104475
ACCCAGGGCCGCTCTTATACAGAAAGCAGCATCCCGTGCTTATAATCTCCACCCTTCTACCCCAGTATCCGGACACCCCGTGAAACCCTAGCGACTCTTG
CCCCGGCGGCGGCGGCGGCGGCGGCAGCAAAGGCGAAGATGATCTACGACGTGAACTCCCCTCTCTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCCTC
CTCCGACAAGAGGAAAATGGAAGAGCAAAAGCCAAAGGAGCAGAGGCCCAAGGCCAGTGAGAACAAGCCTGTGATGAATGAATGAAGGCTTTCTGATGTG
TTTGGTCCTTACAAGGAATAGGCTTCAATCATGTGATTCCTAGTATGTTTCTGTACTGGTTCTGTTTAAGTGAGTTTGATGTGAACCATGTCTGGAACAT
CTGAGAACTTCCCAGCTATCAATCTTTAATTTTACATCTGAGAACTTCCCAGCTATCAATCTTTAATTTAGCTTGATAATTTTCATGCGTGAGATGGAAT
TTAGCTTGATAATTTTCATGCGTGAGATGGAATGGGATGTTGCTTTGAGATTGATGGTTCAA