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Detailed information on CNT30104461


BLAST search results

BLAST vs Swiss-Prot:
sp|P01053|ICI2_HORVU, E-value = 1e-18

BLAST vs NONCODE:
NONORUT002477, E-value = 1e-146

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697884Oryza rufipogonOryza sativa77.1292.993.71445forward
CNT30555553Oryza rufipogonOryza glaberrima75.7472.3586.27437forward
CNT30471857Oryza rufipogonSaccharum spontaneum28.0826.2684.57162forward
CNT30578577Oryza rufipogonOryza barthii57.1994.5694.24330forward

Expression of CNT30104461

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MRQLALADGGGAGDGVDEDADAVGAEVHGHRRPHRNHDDVGVGHVLEDHLLRLLRPQPHHLRPRRLPLLAAGAHLADDLTPPDTIKLMMSYQQLM*

>peptide 2 (79 aa)
MVGVPATVSTKMRTRLGRKSMVTGVPTGTTTMSASGMSLRITFFASSARSPTTSGHDVFPSSPPELISPTTSHLRTRSN*

Sequence

>CNT30104461
TTAGCTAGGTAGTTGGCTACCATGCATTAAATGAAGGTCTCTTTATTTATTCGTAGGAAAAAAAACATTAACACGTAGGTAAAACATGATTCAGATGAGG
ATGGATCGATCGGAACATGCACAGTACATATCACTTGAGTGCATGTGATCATTATTTAATTAAGATAAGCAGGATGCTGAAGGCAGGCAGATGAGGCAGC
TAGCTCTAGCCGATGGTGGGGGTGCCGGCGACGGTGTCGACGAAGATGCGGACGCGGTTGGGGCGGAAGTCCATGGTCACCGGCGTCCCCACCGGAACCA
CGACGATGTCGGCGTCGGGCATGTCCTTGAGGATCACCTTCTTCGCCTCCTCCGCCCGCAGCCCCACCACCTCCGGCCACGACGTCTTCCCCTCCTCGCC
GCCGGAGCTCATCTCGCCGACGACCTCACACCTCCGGACACGATCAAACTGATGATGAGCTATCAGCAATTAATGTAAACTTTTGAGAGAGTATATATGT
AGCTAGCTTAATTAGCTTGCGTATTTATCATGCATATGGCGTATATATATAGGCATAGCTAGCTAGATGGATCGATG