« Back to Oryza rufipogon search


Detailed information on CNT30104455


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002439, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553653Oryza rufipogonOryza glaberrima22.118.17100159reverse complement

Expression of CNT30104455

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MNKLMSTRALTVQAGKYRARLGIRLCLYLKALISLFHR*

>peptide 2 (90 aa)
MSHLHLVEKLERCWAQLKGNPRRVHERLARLGSFVGFISEEKAMKRTSLLWERGEDLCRTLNPCRRTAHSWYNLVWYILHVLTSPMVQLT*

Sequence

>CNT30104455
AAGGCAGTAGATAAGGCTGGAGTTTATGAACAAGTTGATGTCTACTAGGGCATTGACCGTACAAGCAGGTAAGTATAGGGCTCGGCTAGGAATTCGTTTA
TGCTTATATTTAAAAGCTCTCATCTCACTTTTTCATAGGTAGGCGAAAACTCTATAGTTATAGTGTATATTGGCTTTGATTCTTTCTATTGTTATGGGAA
AGGCATATCCCCACCCAGTTCTTCTTCGTCTTAATTAATAACTCCTTCCTGAACTTCAAAGTACGATAGAAACTGACTTATATCTCGTAGGAAAACTAGA
GAATGAGCCATCTCCATCTCGTAGAGAAACTAGAGAGGTGCTGGGCGCAGCTGAAAGGAAATCCAAGAAGAGTCCATGAAAGGCTAGCACGATTAGGATC
CTTTGTAGGGTTTATCTCGGAAGAGAAGGCTATGAAGCGAACATCTCTTCTTTGGGAGAGAGGGGAAGATCTATGCAGGACACTTAACCCGTGCCGGAGG
ACTGCACACAGCTGGTACAACCTCGTGTGGTACATTTTACATGTTCTTACAAGTCCGATGGTACAGTTGACCTAGTATCGAATTATTATAGATTCCGTTG
GCAGCCATTGCCCCCCCTGCATGTCGTCTGACACGACCGAAACGAAACTTTACACCCCCTAGCAGCCCCCTGTCGGCATCGAAAACGGAGGGAAGTGCGC
GTGCTGATGTTTAATCATG