Detailed information on CNT30104436


BLAST search results

BLAST vs Swiss-Prot:
sp|P13951|RBS_SINAL, E-value = 9e-23

BLAST vs NONCODE:
NONORUT002193, E-value = 7e-157

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520889Oryza rufipogonSetaria italica50.1837.6982.85274forward
CNT30180392Oryza rufipogonSecale cereale51.119.2384.95279forward
CNT30436135Oryza rufipogonAegilops tauschii51.6572.3185.82282forward
CNT30258429Oryza rufipogonAvena sativa52.9355.5881.31289forward
CNT30685518Oryza rufipogonTriticum urartu51.162.786.38279forward
CNT30597252Oryza rufipogonOryza meridionalis78.7594.5199.07430forward

Expression of CNT30104436

Peptides detected in this lncRNA

>peptide 1 (54 aa)
LCINIYSRSFHRFHSHMPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 2 (63 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGRAPTWNGAGTRSASGGPPR*

Sequence

>CNT30104436
CCCTTTGTATAAATATATATAGCCGGAGCTTCCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAA
GTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGA
CATCATCGAATCAGAGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATG
AAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCT
GGGTGGCGTCAGTGCACCCGAACATGGGCAGGGCACCCACTTGGAACGGAGCAGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGG
TAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCT