Detailed information on CNT30104432


BLAST search results

BLAST vs Swiss-Prot:
sp|O49290|CPPM_ARATH, E-value = 7e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30118003Oryza rufipogonOryza nivara101.0349.9292.2295forward

Expression of CNT30104432

Peptides detected in this lncRNA

>peptide 1 (55 aa)
ATTAAALALAFSISVVVSSAGGAGSGLGTEEEELTEKRASMSSQESRPTRARAAA*

>peptide 2 (96 aa)
GDDGGRLGLGLLHLRRGLQRRWCRERLGNGGGGVDGEASLDVEPGVEADEGAGGSVDGGEGGLDEVEPHLHELLPRVQRRLPALQHVAHAITLGPPA

>peptide 3 (34 aa)
RRRRRPPWPWPSPSPSWSPAPVVPGAAWERRRRS*

Sequence

>CNT30104432
CGGCGACGACGGCGGCCGCCTTGGCCTTGGCCTTCTCCATCTCCGTCGTGGTCTCCAGCGCCGGTGGTGCCGGGAGCGGCTTGGGAACGGAGGAGGAGGA
GTTGACGGAGAAGCGAGCCTCGATGTCGAGCCAGGAGTCGAGGCCGACGAGGGCGCGGGCGGCAGCGTAGACGGTGGTGAGGGGGGACTTGATGAGGTGG
AACCCCATCTCCATGAGCTCCTGCCTCGTGTGCAGCGGCGTCTTCCCGCCCTCCAGCATGTTGCACACGCGATAACCCTTGGTCCTCCTGCA