Detailed information on CNT30104431


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 3e-17

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678664Oryza rufipogonSetaria viridis52.4790.9197.65340forward
CNT30220801Oryza rufipogonHordeum vulgare56.6494.5997.82367reverse complement
CNT30511593Oryza rufipogonSolanum lycopersicum21.1421.0488.32137reverse complement
CNT30257620Oryza rufipogonAvena sativa18.5235.1983.33120forward
CNT30720843Oryza rufipogonTriticum spelta33.1810097.21215reverse complement
CNT30331560Oryza rufipogonDioscorea rotundata27.1634.8594.32176reverse complement
CNT30551087Oryza rufipogonOryza brachyantha45.9910097.65298forward
CNT30115272Oryza rufipogonEutrema salsugineum21.1428.1988.32137reverse complement

Expression of CNT30104431

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MLSTVILSALGYPAFTVGTITGTLEVRPSRSSQCSNAHTGYGPNCLTTF*

>peptide 2 (39 aa)
QFLTGRDTKGLCPPSLSIQEMEGPSFFLVFSSFHQRVEQ*

>peptide 3 (37 aa)
PILDWKGHQRPLPSLSIYPRDGRAELFFGFFIFSSKS*

>peptide 4 (37 aa)
MKIDGKCLIDLIRSCRNKVQIVRSLGCLSCIHHCTST*

>peptide 5 (30 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQL*

>peptide 6 (35 aa)
MLLSFHPRMGGEPVAVSAVLPEALGKSEERALILG*

Sequence

>CNT30104431
CCCAATTCTTGACTGGAAGGGACACCAAAGGCCTCTGCCCTCCCTCTCTATCTATCCAAGAGATGGAAGGGCCGAGCTTTTTTTTGGTTTTTTCATCTTT
TCATCAAAGAGTTGAACAATGAAGATAGATGGCAAGTGCCTGATCGATTTGATCAGGTCGTGTAGGAACAAGGTTCAAATCGTTCGTTCGTTAGGATGCC
TTAGCTGCATACATCACTGCACTTCCACTTGACACCTATTTAAACGGCTCGTCTTGCCGCTACCTTATCCTATTTCCATGCTTCTGTCGTTCCATCCCCG
TATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGCTACCGGAGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTAGGCTTACTACTTATAT
GCTTTCAACAGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCACGATAACTGGTACACTAGAGGTGCGTCCTTCCCGGTCCTCTCAATGC
TCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACCAC
CTACAGCTCTAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCC