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Detailed information on CNT30104423


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002275, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697687Oryza rufipogonOryza sativa24.3710097.32261forward
CNT30597226Oryza rufipogonOryza meridionalis33.8992.3783.75363forward

Expression of CNT30104423

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MMGMQPYLHTNKQQTFYPTNYSSRIVWRYRF*

>peptide 2 (77 aa)
LPFLVSTHIFWSITCQTVELMKILCHGMILLLQCPKLTFLQSNNSYRYVCLLECLRELRLSDWLSFCSVHPEMIPPF*

Sequence

>CNT30104423
CCTGCCTTTCCTCGTCAGTACGCACATCTTCTGGAGCATAACGTGCCAGACGGTTGAACTCATGAAGATACTCTGCCACGGTATGATCCTTTTGCTTCAA
TGCCCTAAACTCACGTTTCTTCAAAGCAACAACTCCTACAGGTATGTGTGTCTTCTTGAATGCCTCCGTGAACTCCGCCTAAGTGATTGGTTGTCCTTCT
GCTCTGTTCATCCGGAAATGATCCCACCATTCTGATGCAGGTCCTTGCAACTGATGTGAAGCGAAAACAACTTTCTCCTGATCTGTGCACTGGAGCAATT
CCAACTTCTTCTCAATAGTGTGTAGCCAATCACCTGCTTCTACTGGGTTGGTAGTGCTAGAAAAGGTAGGTGGCCTCACACGAAGAAAATCAGCTAACTT
GTTCTGCGGCGGTGGAGCATTGTTGTTCCCTTGGTTGAGCTGGTTCTGCATCTGCTGTATCATCATATTCATTAACTGAGTCTGTTGAGCCAGAACTTGA
GCAAGAGTTGGGTTCCCTTCATTGTTATTATTTCCACTTCCACTGGCGCGAGTGTTCACCATCTGTTGCATATTAGAGAAGATAGGAGGAGAGGGGTTAC
ACTAAAGTTAAGACCTTAACCAGGTTAACACTGATCTGATGTGTGTAGACCATTATATTGTTCAAGTTGATTAAGCAAACAACCTAGTATAGTTACACAC
TCATCACTGAACTACTCCAATGATGGGAATGCAACCATACCTACACACAAACAAGCAACAAACGTTCTACCCTACTAACTATTCTTCAAGGATAGTTTGG
CGGTATAGGTTCTAAGGTAGGATCCAAACTTCATTCCATCTTGACCACTTGGCACTTCGGTTCTTCCTCGATCCACTTGACTGACCTCCATAAATTGACC
ACATCAACATCTTCTAATTTCAACAACTAGTTTCAGAACTACTCAAGTTGAAAGCAGGAGGGGAGAGTAGACAATGAAACAATTTGCAAACAATTCTAGA
TAAGGAAGAAAGGAGAAATTTTCACAAATCATGTTTTCGGAAAATTAGTCCTTAAGGTTTGACCATTTGGC