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Detailed information on CNT30104413

BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QYL3|NLTP3_ORYSJ, E-value = 2e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697916	Oryza rufipogon	Oryza sativa	48.1	46.15	100	330	forward
CNT30138315	Oryza rufipogon	Lolium perenne	13.41	40.35	85.87	92	forward
CNT30118004	Oryza rufipogon	Oryza nivara	22.16	41.19	99.34	152	forward

Expression of CNT30104413

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MILLVLDTEFGSTHRPRQNLLGGSCRRCAGS*

>peptide 2 (31 aa)
MHVESLALSGTRTPRKGAKRTRRTHKKKKAS*

>peptide 3 (33 aa)
GALQGAINVRKRAICMCNNPKQARSTRSCSTCM*

>peptide 4 (53 aa)
MYEKELYVCVIIQNKHVVQGVAVHACRISSSLWYTYPSKRSKTYETNTQEEES*

Sequence

>CNT30104413
TGGAGCTCTACAAGGAGCTATAAATGTACGAAAAAGAGCTATATGTATGTGTAATAATCCAAAACAAGCACGTAGTACAAGGAGTTGCAGTACATGCATG
TAGAATCTCTAGCTCTCTCTGGTACACGTACCCCTCGAAAAGGAGCAAAACGTACGAGACGAACACACAAGAAGAAGAAAGCTAGCTAGCGTGACCGGGC
CGATCAACCATGGATGCATGGTGATTGATCGAGACCTTAGCTAGCTCATCTTTTATTCCAGAATACAGATATGATACTACTAGTACTGGATACAGAATTC
GGCTCCACACATCGACCCAGGCAGAATCTACTAGGTGGCAGTTGCAGGCGGTGCGCCGGTTCCTGAAGGAGGAGGCCTTGCCGTTGAGGGTCCTCACCCC
GCTGCAGCACGACGACGACGGCGAGCTCTCCCTCCCCATCACGTACGACAGGCACGGCGCGATCGACGACGTCACGTCGCCGCAGCTCACCGCCGCCGAC
GCCCTCTCCGCCACCACCGCCGCCGCCACCACCGCCACCAACGCAACCAGCGCCATCGTCCTGCGAGCACCCGCCATTGTCTCGATCGAGATCTAGCTCT
AGCTAACTAGCAACAATGTACACTGGTAGTGAGCTGTAAGCTAGAGCTTGTGGTGGAGTACTGGAGTGAGCAAAGCTGTCGAGGAG