Detailed information on CNT30104407


BLAST search results

BLAST vs Swiss-Prot:
sp|P17642|PRS2_SOLTU, E-value = 5e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697656Oryza rufipogonOryza sativa41.925.4385.61132forward
CNT30371499Oryza rufipogonOryza glumipatula92.748.34100292forward
CNT30604827Oryza rufipogonOryza punctata89.5267.387.59282forward

Expression of CNT30104407

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSFSFSGDSELPSSSSYSTLSLATQEPSPVASSFVSVECDLSFPTLLSASSTSDFRT*

>peptide 2 (37 aa)
FLFILGVFGRVSDEVVLDHLEHAIVAIHDVLLLLRRQ*

Sequence

>CNT30104407
TTCCTCTTCATCTTAGGCGTATTCGGCAGGGTGAGCGACGAGGTAGTCCTCGATCATCTTGAGCATGCCATAGTAGCCATCCACGATGTCCTTCTCCTTC
TCCGGCGACAGTGAGCTGCCGTCCTCGAGCTCGTACTCCACCTTGAGCTTGGCCACACAGGAGCCATCGCCGGTGGCCTCAAGCTTCGTCTCCGTCGAGT
GTGACTTGAGCTTCCCCACCTTGCTTTCTGCCTCGAGCACATCCGACTTTAGGACATGACTTGCGGCGTCGCACACCGCCACCCGGGTCTTGTATGTGCT
TCCCACACCCGCGGC