Detailed information on CNT30104395


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672571Oryza rufipogonSetaria viridis40.8948.184.16202forward
CNT30393881Oryza rufipogonTriticum turgidum20.2424.8195100forward
CNT30587002Oryza rufipogonMusa acuminata30.1655.1991.95149forward
CNT30511330Oryza rufipogonSolanum lycopersicum38.8747.0684.38192forward
CNT30440426Oryza rufipogonAegilops tauschii24.0925.3796.64119forward
CNT30652852Oryza rufipogonRosa chinensis32.7940.787.04162forward
CNT30624277Oryza rufipogonDaucus carota28.9530.0483.22143forward
CNT30721746Oryza rufipogonTriticum spelta40.6912.594.53201forward
CNT30596728Oryza rufipogonOryza meridionalis62.1563.398.7307forward
CNT30371441Oryza rufipogonOryza glumipatula61.7474.7599.34305forward
CNT30646445Oryza rufipogonCannabis sativa16.1923.1987.580forward
CNT3054135Oryza rufipogonAmborella trichopoda23.6819.2882.05117forward
CNT3024196Oryza rufipogonPopulus trichocarpa38.6642.0782.72191forward
CNT30322486Oryza rufipogonAsparagus officinalis36.2338.1788.27179forward
CNT30150825Oryza rufipogonBrachypodium distachyon40.8934.1293.07202forward
CNT30117442Oryza rufipogonOryza nivara61.7474.9499.67305forward
CNT30725946Oryza rufipogonLupinus angustifolius12.9630.4890.6264forward

Expression of CNT30104395

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MCWWLPPPWGCSTGFMATPRTLGVSSLEHRLLSPATTSNLTDHGTAAAGDNLLGTRGELDP

>peptide 2 (30 aa)
MTTKTANIHHKCDQSTKQKARPYWNTCPLI*

Sequence

>CNT30104395
TAAAAACTTCTTTAGGTGGAATGTAGAATCCAGACCATGACCACGAAAACTGCGAACATTCATCACAAATGTGACCAGAGTACCAAGCAAAAAGCACGAC
CATACTGGAATACATGTCCTTTAATCTAGCAATGATAAGCATGGTAGCGAATATGGATAGTAGCAACAATAAGTAACACTCTAAGTGGCCTTGTCGGCCT
TGGCAGCGGTAGCGGCGGCCTGGCCTCTGAGACGACCAGTCCTCCTTGCAGCGATGAGACCAACCTTCTGGCCAGGAGGTGCATCACGGCGGACGGTGGA
GGCGTGACCAATGTGCTGGTGGTTACCTCCTCCGTGGGGATGCTCAACGGGGTTCATGGCCACACCACGCACCTTAGGCGTTTCCAGCCTTGAGCATCGG
CTTCTCAGTCCTGCCACCACCAGCAACCTGACCGATCATGGCACGGCAGCTGCTGGGGACAATCTTCTTGGCACCAGAGGGGAGCTTGATCCTG