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Detailed information on CNT30104374

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST004927, E-value = 7e-17

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30678637	Oryza rufipogon	Setaria viridis	28.84	94.33	97.65	383	forward
CNT30524663	Oryza rufipogon	Setaria italica	33.89	77.32	98.22	450	reverse complement
CNT30641615	Oryza rufipogon	Nymphaea colorata	33.96	81.41	89.36	451	reverse complement
CNT30549212	Oryza rufipogon	Ipomoea triloba	73.34	32.28	91.48	974	reverse complement
CNT30270599	Oryza rufipogon	Chenopodium quinoa	70.33	57.37	91.54	934	reverse complement
CNT30730494	Oryza rufipogon	Corchorus capsularis	63.86	96.36	91.86	848	reverse complement
CNT30632746	Oryza rufipogon	Capsicum annuum	13.03	23.93	93.06	173	forward
CNT30294119	Oryza rufipogon	Triticum aestivum	20.48	99.63	97.43	272	forward
CNT30396824	Oryza rufipogon	Triticum turgidum	56.85	74.98	97.48	755	forward
CNT30569398	Oryza rufipogon	Actinidia chinensis	50	33.98	91.11	664	reverse complement
CNT30552690	Oryza rufipogon	Oryza glaberrima	82.61	71.65	98.27	1097	reverse complement
CNT30442196	Oryza rufipogon	Aegilops tauschii	63.55	99.53	98.34	844	forward
CNT30657980	Oryza rufipogon	Triticum dicoccoides	30.2	98.28	97.51	401	forward
CNT303548	Oryza rufipogon	Zea mays	73.95	68.96	98.07	982	forward
CNT30205642	Oryza rufipogon	Helianthus annuus	70.56	90.53	92.85	937	reverse complement
CNT30688674	Oryza rufipogon	Triticum urartu	62.35	62.87	98.31	828	reverse complement
CNT30363261	Oryza rufipogon	Sorghum bicolor	39.91	41.63	96.6	530	reverse complement
CNT30620564	Oryza rufipogon	Cajanus cajan	56.17	14.42	90.88	746	forward
CNT30354697	Oryza rufipogon	Lactuca sativa	26.2	49.29	95.98	348	reverse complement
CNT30481523	Oryza rufipogon	Chara braunii	4.89	27.08	93.85	65	forward
CNT30410483	Oryza rufipogon	Papaver somniferum	77.11	50.05	92.97	1024	reverse complement
CNT30642274	Oryza rufipogon	Cannabis sativa	43.52	70.75	91.52	578	forward
CNT3036965	Oryza rufipogon	Cucumis melo	53.77	98.08	91.04	714	reverse complement
CNT30150154	Oryza rufipogon	Brachypodium distachyon	67.47	78.32	97.54	896	reverse complement
CNT30576813	Oryza rufipogon	Oryza barthii	14.83	26.73	96.95	197	reverse complement
CNT30581628	Oryza rufipogon	Echinochloa crusgalli	8.51	33.04	98.23	113	reverse complement
CNT30604015	Oryza rufipogon	Oryza punctata	37.95	104.35	94.25	504	forward
CNT30174498	Oryza rufipogon	Vigna angularis	29.89	78.61	87.15	397	reverse complement

Expression of CNT30104374

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSVWPEETFARLRYLLGGLRPIETVYLRLSLGPRV*

>peptide 2 (35 aa)
MLLSFHPRMGGEPVAVSAVLPEALGKSEERALILG*

>peptide 3 (37 aa)
MKIDGKCLIDLIRSCRNKVQIVRSLGCLSCIHHCTST*

>peptide 4 (37 aa)
PILDWKGHQRPLPSLSIYPRDGRAELFFGFFIFSSKS*

>peptide 5 (39 aa)
QFLTGRDTKGLCPPSLSIQEMEGPSFFLVFSSFHQRVEQ*

>peptide 6 (56 aa)
MLSTVILSALGYPAFTVGTITGTLEVRPSRSSRTRERSSQCSNAHTGYGPNCLTTF*

>peptide 7 (32 aa)
MARAPPEGGLLRLPPKLRRKGPKPIPGNSKAS*

>peptide 8 (30 aa)
MDRTVSRRSEPSSRTALMGEQPNPWNHLQL*

>peptide 9 (32 aa)
MARAPPEGGLLRLPPKLRRKGPKPIPGNSKAS*

Sequence

>CNT30104374
CCCAATTCTTGACTGGAAGGGACACCAAAGGCCTCTGCCCTCCCTCTCTATCTATCCAAGAGATGGAAGGGCCGAGCTTTTTTTTGGTTTTTTCATCTTT
TCATCAAAGAGTTGAACAATGAAGATAGATGGCAAGTGCCTGATCGATTTGATCAGGTCGTGTAGGAACAAGGTTCAAATCGTTCGTTCGTTAGGATGCC
TTAGCTGCATACATCACTGCACTTCCACTTGACACCTATTTAAACGGCTCGTCTTGCCGCTACCTTATCCTATTTCCATGCTTCTGTCGTTCCATCCCCG
TATGGGTGGAGAACCCGTCGCTGTCTCGGCTGTGCTACCGGAGGCTCTAGGGAAGTCGGAGGAGAGAGCACTCATCTTGGGGTAGGCTTACTACTTATAT
GCTTTCAACAGTTATCCTCTCCGCACTTGGCTACCCAGCGTTTACCGTAGGCACGATAACTGGTACACTAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT
AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAA
CAGCCCAACCCTTGGAACCACCTACAGCTCTAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGGACTCTTGGGGAAGATCAGCA
TGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGATGGCCCTTCCACTCGGCACCGTCTGATCACTAAGGCCGACTTTCATCTCTGCTCGACGGGTGAGT
CTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGACCAATGTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACG
CCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGCGGGTCTGACACAAGGTTAGAATCCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCG
GGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTAAAGCTTCATAGGGTCTTTCT
GTCTAGGTGTAGGTTAGAATCCGAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTG
CGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTAAAGCTTCATAGGGTCTTTCTGTCTAGGTGCAGGTAGTCCACATCTTCACAGACATGTCTATTT
CACCGAGTCTCTCTCCGAGACAGTGCCC