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Detailed information on CNT30104366


BLAST search results

BLAST vs Swiss-Prot:
sp|P16130|RBS2_ACEPE, E-value = 9e-08

BLAST vs NONCODE:
NONORUT002193, E-value = 9e-157

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30648337Oryza rufipogonRosa chinensis14.8823.2688.79107forward
CNT30721718Oryza rufipogonTriticum spelta20.0331.9384.03144forward
CNT30604902Oryza rufipogonOryza punctata17.6639.0892.91127forward

Expression of CNT30104366

Peptides detected in this lncRNA

>peptide 1 (54 aa)
LCINIYSRSFHRFHSHMPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 2 (65 aa)
MAAALASRGGRGCGRIGRRARAYPRAFVAGSRARGGVAPGSWIVAVVASRPGLWLWSSSSSLHMM*

>peptide 3 (66 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWGAISAAHQALSFFARVLLEMHCSAHRLPRYV*

Sequence

>CNT30104366
CCCTTTGTATAAATATATATAGCCGGAGCTTCCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCAA
GTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAGA
CATCATCGAATCAGAGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGATG
AAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACCT
GGGGGGCCATCTCTGCAGCTCACCAAGCTCTCTCCTTCTTTGCTCGAGTACTTCTTGAGATGCACTGCTCTGCACACAGGCTCCCGCGGTACGTATAAAT
AGCCAAAACTCAGCGGATCGGATGGCAGCGGCGCTCGCGAGCCGCGGAGGCCGGGGATGTGGTAGGATTGGCCGGCGTGCGCGCGCCTATCCGCGGGCGT
TTGTGGCTGGCTCACGCGCGCGCGGTGGTGTCGCGCCGGGCTCGTGGATTGTGGCCGTGGTGGCATCTCGACCCGGGCTCTGGCTGTGGTCCTCGTCTTC
CTCTCTCCACATGATGTAG