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Detailed information on CNT30104346


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002100, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697715Oryza rufipogonOryza sativa31.2564.199.23391forward
CNT30108945Oryza rufipogonOryza longistaminata20.4629.2993.75256reverse complement

Expression of CNT30104346

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MHRVFSVLLGHSRGLNSCVKAEEKIRCLHSSSFTH*

>peptide 2 (30 aa)
MLALFIIYTLNYKNIRHAESFFFFWQNVSL*

>peptide 3 (30 aa)
MVFFFLPDVILSRGVIQCSNKTNNHGTSDS*

>peptide 4 (35 aa)
MDMWQQVELSETPPSNEKTTISFISSMILITNFLC*

>peptide 5 (72 aa)
MGDYVKTPANAMQMLNGESKPLPYLMDFVLNVCTKRLWLKGYQKDSPERKPMVASDSSDRINQWGGRDHRFR*

Sequence

>CNT30104346
AGAAGCAAACTGGCATAACTGGTGACTTGCAACATAGAAAATTTATATGCATAGAGTATTTTCAGTGCTGCTAGGACATTCCAGAGGCCTAAACTCTTGT
GTCAAGGCAGAGGAGAAAATTAGATGCTTGCACTCTTCATCATTTACACATTAAATTATAAAAATATCAGGCATGCTGAAAGTTTTTTTTTTTTTTGGCA
GAATGTAAGTTTGTAGGATAGTATTAAATAACTACCTGTCGGAATGTTTTGTTTATGGATATGTGGCAGCAGGTTGAGTTGTCTGAAACACCACCAAGCA
ATGAAAAAACAACCATAAGCTTCATTTCGTCTATGATCTTAATTACCAACTTTCTTTGTTGAACTGGACCAACACAACAAACCACATAAATCCGGTGAAG
TAGTAATAATTTTGTTGCAACAAATTAGACATCAATAAAGGATTTGCACACCGTCTATCGAAGTGTTATGCTCCCAGTATCAGAGCTAGGGCTTTTGATG
TCAGTACTGGGCTATTGGCTGGTACCTAAGCACTGCTAATAAAAAGAATATCCTTCCATTGCATATCCTGTTTGTAGAATGCTCTCATATAACATATAAT
CTTTATACTTATAGCCTTGTAGTAATACCTAGCATGGTTTTCTTTTTTCTTCCTGATGTCATTCTATCAAGGGGTGTCATACAATGCAGCAACAAAACCA
ATAACCATGGAACTTCTGATAGCTAAATTCATATGAAGTAATCTGAACTCAAGAAAAACTCAACATAATCTAAATCTCGCAGCCCTGCTTAAGAGAGGAG
AAAGCTCGATAGCTTGCTCAGCATGACGGTAGATGCGCAGCATGGAAGTCGTCCTCTCTATAATCTGTGACCTACACCTCATCCTAGCCCATCAGTTTCT
CCACAGAACCTAAGGCAAGATGGGGGATTATGTAAAAACACCAGCAAACGCAATGCAAATGCTCAATGGCGAGTCAAAACCATTGCCTTACCTTATGGAT
TTTGTGCTAAATGTATGCACAAAACGATTGTGGTTGAAAGGGTATCAAAAGGATTCACCAGAAAGGAAACCAATGGTCGCAAGTGACTCCAGTGATCGGA
TCAACCAGTGGGGAGGCCGAGACCATCGATTCCGCTGACCCCCAAACCGGATCTGTAGCTCACCGATGACTCCAGTGATCGGATCCACCAGTGGGGAGGC
CGAGACCATCGATTCCAATGACCCCAAACCGGATCTGTAGCTCACCGAGGA