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Detailed information on CNT30104336

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697684	Oryza rufipogon	Oryza sativa	68.13	100	100	761	forward
CNT30672806	Oryza rufipogon	Setaria viridis	12.53	46.36	87.86	140	forward
CNT30555702	Oryza rufipogon	Oryza glaberrima	100	96.04	99.46	1117	forward
CNT30597240	Oryza rufipogon	Oryza meridionalis	28.02	47.21	95.21	313	forward
CNT30371513	Oryza rufipogon	Oryza glumipatula	93.2	97.38	99.71	1041	forward
CNT30578504	Oryza rufipogon	Oryza barthii	95.08	96.02	99.81	1062	forward
CNT30604831	Oryza rufipogon	Oryza punctata	29.36	55.88	91.16	328	forward

Expression of CNT30104336

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MIRDIMSMMGRVHVCMYVCCCATPQSYHTYKQAKLMQSLITGCHPATSVPWSI*

>peptide 2 (43 aa)
PKFHFVQTIDLQCSNTRHNLDYITTSITQALPGNISKPPCLMG*

>peptide 3 (88 aa)
MTPWRGRRRKAQLGCLVEQLLLQVQLALHPLSSLLLPMVLEEQPQIQPVLHLPSRFRLVLEQECRRLRSCWHLQQFSSPHRCLLEHLR*

>peptide 4 (30 aa)
MMIRWGVSSSSSGALHGRGTSRQLPVVDRG*

Sequence

>CNT30104336
CCCCAAATTCCATTTCGTTCAAACCATCGATCTACAATGTTCAAACACAAGACACAACTTAGATTACATCACTACTAGTATTACACAGGCATTACCGGGG
AATATATCCAAACCACCCTGCCTGATGGGTTGATGGATAATCTTAAATGGATGGATAAGAGGATGCACATCCACATCCAACCTTATTCATAGATAGCTAA
TCAAGTCATTACACATAATACAGCACAGGTACAAACACAGACAGACGGACGGACAGACGACGGTATATATGTCCTAAGATTAATGTGCTTACAGCAAGTT
AGGCATGATAAGAGATATTATGAGCATGATGGGTAGGGTACACGTATGTATGTATGTATGTTGCTGTGCCACACCACAATCATACCATACATACAAGCAA
GCTAAACTGATGCAGAGCCTAATAACCGGCTGTCACCCAGCAACGTCAGTTCCTTGGTCGATTTGATTACACAATGCAAATGCGAATGATTCCTAAAAGG
CGTACATCACGGACAAGGGGAGGAGGATGATGATTCGTTGGGGGGTTTCATCTTCATCTTCAGGTGCACTTCACGGCAGAGGCACCAGCCGGCAGCTGCC
CGTTGTTGACAGGGGATGACTCCTTGGCGGGGGCGGCGGCGGAAGGCTCAGTTGGGTTGCTTGGTGGAGCAGCTGCTGCTTCAGGTTCAGCTGGCTTTGC
ATCCTCTTTCTTCTCTCCTCCTTCCGATGGTGCTGGAGGAGCAGCCTCAGATTCAGCCGGTTTTGCATCTTCCTTCTCGGTTCCGGCTGGTGCTGGAGCA
GGAGTGTCGGCGTCTGCGGTCTTGCTGGCATCTTCAGCAGTTTTCATCTCCACATCGGTGTCTTTTGGAGCATCTTCGCTAGGGGCCTCCTTCGCCTCTT
CAGCAGGCTTTGTCTCTACATCAGTCTCCTTTGGAGCATCTTCGCTAGGGGCCTCCTTGTCAGCTTCAGCGTCTTTCGCTTCTTCATTTTCGGTGGCCTC
CTTTTTCTCCTGCTTGCCCTTTCTGCCAGATGAGTTCCTAGAACGTTTCGGGATCTTCTCCCCTTCTGGGCTATCGAAAGCCTTAACTTTCTCGCTAATG
CGAGCAGAGCGCCTTGG