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Detailed information on CNT30104330


BLAST search results

BLAST vs Swiss-Prot:
sp|P07924|RT13_WHEAT, E-value = 2e-38

BLAST vs NONCODE:
NONORUT002290, E-value = 1e-128

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30501657Oryza rufipogonCoffea canephora28.044.8890.83240forward
CNT3098190Oryza rufipogonSolanum tuberosum25.4742.0889.45218forward
CNT30592619Oryza rufipogonMusa acuminata28.510.5888.93244forward
CNT30554385Oryza rufipogonOryza glaberrima14.9556.6498.44128forward
CNT30354619Oryza rufipogonLactuca sativa28.0414.4192.08240forward

Expression of CNT30104330

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MAFFGPIPSIFVEAILTCSSGSDLAPEIYDILYPSLFLVFSARIYNGLQVLMMSEWGLLN*

Sequence

>CNT30104330
TGAACAACATGATCTTGAGCTATCATTTGTTCAATTTGGTCGATCTGATACTTAGTTAACTCATTCATCTTGATGTTCCCACTGATACCTAATCGATAAC
GAAGCTGAATGGCTTTTTTCGGTCCAATTCCATCCATTTTTGTTGAGGCAATTCTGACTTGTTCATCGGGAAGTGATCTAGCTCCTGAGATATATGACAT
TCTTTATCCTTCTCTTTTCCTGGTCTTCTCGGCTAGAATCTACAATGGACTACAGGTCCTTATGATGAGTGAGTGGGGGTTGCTCAATTGACTACACTAT
TGGTGCACTCTATGCTATCTCCTTTATGAGTTTCTTCCTTTCTGAAAGTCACCACAGTGGAGAGTTACTATCGACTTTCTCCATGTGCCACTTCTATATG
GGAATGTGCTAGTAAGGAAAGCCGACGTTGAAGAAAGACAAGAACTACCCACCCTATTGACTAGTAAGGAAGCAAGTCCCTATATAAGAGTTAAGCAATG
ACCGAAAGCAATTAACGTGCCAATAAGAGTTCCCCGACACGAACCATAAAATAGAAATACACTACTCCAGCAAATACAACTGCACTTCGCACTTCAGAAA
ATCGTATAAAAATGTGTGGTTCCAAATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTGCTCAAAAAATCGTATAAAAATAAAGCAATCAAAAGGTGAAG
GCAGGGCAGTGGGCGTGGGACTGTAAATCCTTTTTCGTTCGCTGGGCCTGGGCCCTTTGGACTCTAAATCCAAACGGAGTGAGTGGTTCGATTCCACTTT
AGAACGAAAGCAAATGCAATGAAACGAGACGAGAATCAAAGATTTTTCAGTGCCGC