Detailed information on CNT30104304


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 5e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Oryza rufipogonSetaria viridis57.9163.6693.66205forward
CNT30404178Oryza rufipogonBeta vulgaris22.8821.0986.4281forward
CNT30563287Oryza rufipogonActinidia chinensis29.9422.8484.91106forward
CNT30555769Oryza rufipogonOryza glaberrima10083.2999.44354forward
CNT30440702Oryza rufipogonAegilops tauschii76.5582.1294.1271forward
CNT30689646Oryza rufipogonTriticum urartu62.4376.7494.12221forward
CNT30721908Oryza rufipogonTriticum spelta76.5585.4994.1271forward
CNT30361575Oryza rufipogonSorghum bicolor80.2344.4490.49284forward
CNT30597233Oryza rufipogonOryza meridionalis10096.298.59354forward
CNT30322845Oryza rufipogonAsparagus officinalis10026.6482.49354forward
CNT30578403Oryza rufipogonOryza barthii10099.72100354forward
CNT30118019Oryza rufipogonOryza nivara99.1599.7298.86351forward
CNT30333334Oryza rufipogonCynara cardunculus98.3143.6181.9348forward

Expression of CNT30104304

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSSALGQHQAWRSCQEPDHSTRRCCWGCT*

>peptide 2 (33 aa)
VGVKPLGHLHSRDSGISPSHREVGAEPNLSTGP*

>peptide 3 (53 aa)
MYLIPASAICFQMLALRSVATFSKSSALLFPSQKDSRANLSSLLGPMRGYPTM*

Sequence

>CNT30104304
AGTTGGTGTCAAACCACTTGGTCATCTCCATAGCAGGGACAGTGGCATTTCCCCTAGCCATCGAGAAGTAGGTGCTGAACCCAATCTCTCCACCGGTCCA
TGAGTAGCGCTCTGGGACAGCACCAAGCATGGCGGTCGTGTCAAGAACCTGATCATAGTACGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCGTCA
GCCATTTGCTTCCAGATGCTGGCCCTGAGGTCGGTCGCAACCTTCTCCAAATCCTCAGCGCTGCTCTTCCCATCCCAGAAAGACTCCAGGGCAAACTTGA
GCTCCCTCTTGGGGCCCATGCGGGGGTACCCAACAATGTGAGACGCCATCTTTC