Detailed information on CNT30104298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001130, E-value = 1e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504588Oryza rufipogonNicotiana attenuata9.580.6896.22238forward
CNT30554880Oryza rufipogonOryza glaberrima14.0627.56100352reverse complement
CNT30328853Oryza rufipogonAsparagus officinalis42.2165.6988.931057forward

Expression of CNT30104298

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MKSGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDKYVEIFVEPGRESQSIFSRIPTHATHEDFSIDRVKGSAPPTLKG*

>peptide 2 (65 aa)
MGGPGLNEERTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRQVRRDLRGTGEGVSIDLF*

>peptide 3 (47 aa)
MWQRQDHLWLRDTLVQLRFLSSHEALFEMKKARAPMYFWLQWASLLN*

>peptide 4 (43 aa)
MDDIPRPRFFCIVWGPAAAELRGIAAPSPGAILGPSSRWAGRA*

>peptide 5 (62 aa)
MHSFPSISSGASSSGFFPLFTPSTPQPRKECMFGIFGLHIQVSRVVLRFPLVSNGKLPKFLQ*

>peptide 6 (32 aa)
MGFHLCRPSESNEGRRTIRFIKGDGPFVRRGP*

>peptide 7 (42 aa)
MFSFFATRCQQLFQSSREPSLLIRRCRRPTHFLTFSTPKTCD*

Sequence

>CNT30104298
GACGGTCCGGTGCTAATAGAAGTCGCTTACTCTCCGTCTAGCGAAGGTGCCAGGGGCAGGGCTTTTTTGTAGTAATAGTGGGCGGGTCTCATGGGATTTC
ATCTATGCCGGCCGTCGGAATCAAACGAGGGTCGAAGGACCATTCGATTCATTAAGGGGGACGGCCCATTTGTAAGGCGGGGGCCCTGATGGACGACATC
CCCCGGCCTCGATTCTTTTGCATAGTCTGGGGGCCGGCCGCAGCAGAGCTGCGGGGCATAGCGGCACCCTCGCCTGGCGCCATTCTCGGACCTAGCAGCA
GATGGGCGGGCCGGGCCTGAATGAAGAGCGGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACTAGACAAGTACGTAGAGATCTTCGTGGAACCGGGGAGGGAGTCTCAATCGATCTTTTCTAGG
ATTCCAACTCACGCCACGCACGAAGATTTTTCTATTGATAGAGTTAAGGGCTCGGCTCCCCCGACTCTAAAAGGTTAGGTTACTACCAGCTTGCCTCTAC
GGAAGAGGTGTACTTTGTATTGTCTGGGGGTCATATAGATCGGAACCCGGAGCGAGTTGAACGAAAACCTTACCCACAGCTACAACTACTGGCGCTTCAA
AGGGCTTAGATTCTAAGGTAGGGGTGGAAGCCGTGAAAGCCTTTGGTACTTTAGTCAGGCGAGCAGCCCTTAAACAAAATCAAAGGCGCGACCATCCCCC
CTTCCCCTATTTTTTGCATTTCATTCTCTATTTGGCCCGCCTCATGAAAAATGATAGGCCTATTGATTCGAAGTAAATACGAAAGGGTCGGTCAATAGCA
TAGCTATTTTTTTTTCTCCTTTCGAAGGAAAGGCCTTCGCATTCTTAATCTGGTAGGGCCGGACGGCTTTGTTTGCCCTAGCTTGGCGAATCCGCGCCCC
TGACCGTTCTCGCGAAGTCTTTGCAACGGCTGGGAAACCAGTCTACGAAGCGAAGCCTATTGCCACGCCGACCATCAAATACGAGATTGGGCCCCTTCTC
AAAGATGGAATGGCCCAGCCCAATAAAGGAAGGTTAACGTACGCGATGCCTTCCATTTGTACGAATGCGAACATACCCGACCGGACGTAGAGCCAAAATT
CACTGGCAGACCGAGTCGGGCGCAGGTGCCAGATCCTTAAAGTAAAGTCTCTATCAGCCTAGTGTACCAACCACGTGGTACGACGGGCACTCAAAGACCT
GGCGAATGAGGGCCCACCCCACCCAAGAGCGCTTATGTCATATGGGAACTCTTGGCTGGAAACAATCCTTATGATTTTGATATCCGGTTAGAATAATAAG
AAAGAATCTAAGTCCAGGTTGGTTGGTGAGCCTAGTGATAGGAGACTATCTAGCTTGGTTCGGAGAGCACTTGTTGGGTTTAAGATTAGTTTTTTGCTAA
ATGTTACGGCCTAAATGCTGAACTATTGACCCTACTTGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGATTGCATGCATACATCCGTAAGTAACTTA
GTGCAACATGGCAAATTTCATTGAGAGGAATTAGCAAAGAAAAGAAATCTTCTTTCTGGGCCTAAAGAGAAAATAGGCTTCAAGTCTTGAAAGAATTCTT
ATAGCAAGTTACCCAAGCACATATGCTTAAAACAGTAGAGAATAGTGCATAGGTGAAGGTGTAAGGGAAAAAATCTACTATGTTTTCGTTCTTCGCTACT
AGGTGTCAACAACTTTTCCAGTCCAGTAGAGAGCCTTCCTTGCTCATCAGGAGGTGCCGCCGCCCCACACACTTCCTCACTTTTTCCACCCCAAAAACCT
GTGATTGACATCCTTGGTTAACCCCCTCATCAAGACATACCCAACAATCTTTAGAAAGCACATCTCATGCACAGCTTTCCATCTATCTCTTCGGGGGCTT
CTTCTTCCGGCTTCTTCCCTCTTTTCACTCCAAGTACACCGCAACCGAGAAAAGAATGCATGTTCGGCATTTTTGGTCTTCACATTCAAGTATCTAGAGT
TGTTTTGCGTTTCCCGTTAGTGTCCAACGGCAAACTTCCCAAGTTTCTTCAATAGACTTTCTTCGGGTACGACTTTGCCTCCCTCCCAGGCACGCTAGCC
GACTGAGTTAGAAGAGGCGCCTTGTTCCAAGAAAGGATATGTGGCAGAGACAAGATCATCTGTGGCTACGTGATACGCTTGTTCAACTTCGATTTCTCTC
ATCTCACGAAGCTCTATTCGAAATGAAAAAAGCTCGTGCACCGATGTATTTTTGGTTGCAATGGGCTTCTTTGTTGAATTAAGGTAGTAGCAGTACACCA
ATTGAAAGATCCCACAAGGCCTCCCTATAATAAATAATGTGAAAAGTAAAACCTTGGCGGCCTGGAGTGGTGTATAGAGTGGAAGACATGGAACGAACCT
ATAG