Detailed information on CNT30104296


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001257, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555414Oryza rufipogonOryza glaberrima100.0537.8999.222044forward
CNT30371298Oryza rufipogonOryza glumipatula57.8121.0698.561181reverse complement
CNT30109436Oryza rufipogonOryza longistaminata57.8121.0597.971181reverse complement
CNT30578161Oryza rufipogonOryza barthii95.0135.0399.071941forward
CNT30117812Oryza rufipogonOryza nivara44.7924.8299.13915reverse complement
CNT30551937Oryza rufipogonOryza brachyantha31.139.6779.25636reverse complement

Expression of CNT30104296

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTPFRISITLNHLQIIFSLVRIKQINISLVLSELNKLTSVI*

>peptide 2 (41 aa)
MFKCSDMTYLPIKLPDLKEKPQSTELQATELSLTTSITTLK*

>peptide 3 (40 aa)
MDSFTYRLTSPPAAVGGKGKNKSHRAIHSDERQRGTGQRAC

>peptide 4 (36 aa)
MINQQKGSERGEIETDGFLYLPTYQPTRGGGGKGEE*

>peptide 5 (47 aa)
TTTLQTKSGHGSPNHLIITMSNIFRMLKEHIEDNTPNEQTKGQTILD*

>peptide 6 (35 aa)
MEWRNHLIHQCLILAMTNSYHRLQFLWFQYAKKCS*

>peptide 7 (55 aa)
MRKEVAPVLNGMEKPSYTPMSNPSHDQFIPQASVSLVSICQKMFIMQIKWSDNRF*

Sequence

>CNT30104296
TTACAACAACCTTACAGACCAAATCAGGACATGGAAGTCCGAATCATTTGATAATTACAATGTCCAACATCTTTAGGATGCTTAAAGAGCACATTGAAGA
CAACACACCAAACGAACAGACAAAGGGCCAAACTATACTGGACTGAACCCACCATCTAGCTAGTTATAGAACATTACATGCCCAGATGTTAAAGATACTA
CTAGAGAAACAAGTTGGGCCAACTAATTAGAGATCAGATAGTGCTACTGATAACTCTTCCACAGTTCATAAAGCATAGATTTCTACTCACAAGAACATTT
AATAGATGGTTTTATAATGACACACTTTACACAACCATCGAATTTACTTCTCAGAGCAGGAAAGCAAATTCAGTTCCATCAATTTTCTTGAAACAAATCT
TCAAATTATTTTCACCATTAGTCAAAAGATTCCAGCATCACCTTCATAACCTTGTATATTGTTCAAAGGAAGTAACTGCCAAAAGAATCATCTACCATAG
AAACTTTAGGATGGGCCTTTTAGCTACTACATAACCATCTCCATCTTAACTGATAAATTAGCTTTCCGGAAGTAAACAAGTTAACATCAAAATTCTGTGA
GAACTATGACCATGTTTAAATGTTCTGACAAGATTGACTGATCCATGAACCATAGCAGGATTTGACTTAACAGCAAAGTACCAAGCAGATAAATTTCCTC
CAAATAACATCATTCACTTGTTAGTTTTGATGAGAAAAGAAGTAGCACCAGTCTTGAATGGAATGGAGAAACCATCTTATACACCAATGTCTAATCCTAG
CCATGACCAATTCATACCACAGGCTTCAGTTTCTCTGGTTTCAATATGCCAAAAAATGTTCATAATGCAGATTAAGTGGTCGGACAATCGCTTCTAATGG
AAGCAAACCAACTACACAATATTAACATATTGAAAATTCAATTAATTGCAATTAGTCATAACCCTAAACCAAAGCATTAAGGTTCCTACAAACTAACACC
AGTGAACATGAAAATAACGGGATTTGTACCTCAAACTGAACAGGTCAAGCAGCAAGTAATCTTTAGTTCCTGTACTAGGACAAATTAATCCACAGTGAAG
GCAGTCAAAAAGAGCTCCTTAAATCCTCGTGAAAGAAATCCTGAAGTTAAACTTTAACTAAGAACTGACACAGAAGAATCATTCCAACGCCCTAGTTTAA
CTTAAACTTTAGCACATATTGCCAATTTTTAAATTCCAAAAAGCAATACATGACGCCGTTTAGAATTTCAATAACACTCAACCATCTTCAAATAATCTTT
AGTCTTGTCAGAATTAAGCAAATTAACATCAGTTTAGTCTTGTCGGAATTGAACAAATTAACATCGGTGATTTGAAAGCTCTGAGCAGACCCAAGAAAAC
CATCTCCCATCATGTTTAAATGTTCTGATATGACTTACCTTCCCATAAAATTACCAGACCTGAAGGAAAAACCGCAGAGCACAGAATTGCAAGCAACCGA
ATTGTCACTAACTACAAGCATCACAACCTTGAAATGAACAGAAGTATAATCTTAGCCCAGTGAGCAATCCTAACCATGACAATTTCAGAGCACAAACTTC
ATTTTATCTAGGCTTGATCATACCCAAAATATCCACGGTACAGCTTAATTGAGCTGACAATCCATCTCACCGAACAGAAACTGAAGCAAACCAACCGACC
TCGCAATCTTAAATAGCAAATCACAATTAGCCATAATCCAATCGAAAGAAGGGCCGTTCAGAGAACTAACGCAACAGCAAGAGACGAATCGCCCAAACTA
GACCCCCAAACCGAACGGATCAAGCAGTCGCCTAAACTAGAAACCGGACCGAACCGATCAAAGCACCACCTGATGATCAATCAACAAAAGGGCAGCGAAC
GAGGTGAGATCGAAACCGATGGATTCCTTTACCTACCGACTTACCAGCCCACCCGCGGCGGTGGGGGGAAAGGGGAAGAATAAAAGCCATCGAGCAATCC
ACAGCGACGAGAGGCAAAGGGGAACGGGGCAACGGGCTTGCGG