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Detailed information on CNT30104292


BLAST search results

BLAST vs Swiss-Prot:
sp|P68172|SAHH_NICSY, E-value = 5e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670787Oryza rufipogonSetaria viridis22.1833.689.84128forward
CNT30529934Oryza rufipogonEucalyptus grandis22.1830.782.03128forward
CNT30365203Oryza rufipogonSorghum bicolor18.7250.2393.52108forward
CNT30151326Oryza rufipogonBrachypodium distachyon23.223391.04134forward

Expression of CNT30104292

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MANFKLTLLMPQPLVVLGSLVPVVRGLVGTLNWNADVVSLRLGELGQPGTKLAQVEGGHLLVEVHETTLSKDNDASVGLREDPAVGLRLDGDALDTRVG

Sequence

>CNT30104292
AACTATCTTTAAAGGCAAGAATATTATTCATAAATGACGCATGATTTTTATCAAAACGCTTGCAAATGATATCAGATAAGTAGAGTCAACAAGACAAAAC
TGTATCTGCCAAAGCACACCTCCCCAACTCCACCCAATTACGCCATTATTTCTGGGCAAAAGCAAACGGCTTCCCATTCCTCCCCTTCACCAGTCTCAAA
CCATAAACCCCACAACAAATCCTCCTAAGTGACGGCATATAAGATGATGAAAACAAAGCAGGATACTCCAGAGTCGTCATGGCGAACTTCAAGTTGACAC
TTCTCATGCCACAGCCGCTAGTCGTGCTGGGCAGCCTAGTACCGGTAGTGCGCGGGCTTGTAGGGACCCTCAACTGGAACGCTGATGTAGTCAGCCTGCG
ACTTGGAGAGCTTGGTCAGCCTGGCACCAAGCTTGCCCAAGTGGAGGGCGGCCACCTTCTCGTCGAGGTTCATGAGACGACCCTCAGCAAGGACAATGAT
GCCAGTGTTGGTCTCAGGGAAGACCCAGCGGTCGGTCTGAGGCTTGATGGTGATGCGCTTGACACCAGGGTAGGTCT