Detailed information on CNT30104290


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696870Oryza rufipogonOryza sativa98.7545.9999.81981forward
CNT30106621Oryza rufipogonOryza longistaminata63.6690.7698.671277forward

Expression of CNT30104290

Peptides detected in this lncRNA

>peptide 1 (61 aa)
QLPSSFPHFLLPEFFPSLSYLIFSPLACFLKFSFSLSPSCVAAGHLSRLGVLPFQLIVGKP*

>peptide 2 (66 aa)
MFLATFSSGQSESSIRTFRPFRFVTLENATALFGGASPSCSFSQKLLLLEAASNSPQLLRICSYRF*

>peptide 3 (54 aa)
MLRSSMTGRPTLSLSSWFGIPGNFNVLRNSVGYMCSMLLLFVIALQTVSQLSKM*

>peptide 4 (31 aa)
MICIDYELFFLASIINCRIFYRATANYELLS*

>peptide 5 (30 aa)
SSSHLLFPTSFFLNFSPHSLISSFPHLLAS*

>peptide 6 (29 aa)
MAEDLFRTNGQLVSLGDMMIACSLVDVTK*

Sequence

>CNT30104290
AGCAGCTCCCATCTTCTTTTCCCCACTTCCTTCTTCCTGAATTTTTCCCCTCACTCTCTTATCTCATCTTTTCCCCACTTGCTTGCTTCCTGAAATTTTC
CTTTTCCCTCTCTCCTTCCTGCGTCGCCGCCGGTCACCTGAGTCGCCTCGGTGTACTTCCCTTCCAGCTTATTGTGGGGAAACCTTGAAGGGCTCCCTGG
GGTCAGATCCGTTTGCTCACGGATCGGAGGTGTGCGGCACTGGGGATATTGATGTGCGACGAACCGTCGTCGGTATCGGAGGACCTTCGGCACAGCAAGG
GTCCTTTGACGAAGCATCTCGTTTGCTGTCCATGATTGGAGCAGTGGCTCATGGTTTCAGCAGTGTGAAGCTGGCAGTCTTCCGTTGGGGATATCATTAG
GATTGATTCATTTGTCTCTTTTATTGAAGGAAAAGTGTACTGCTCTTTGACGCACTCCATCAAAAATATTTTACATCAAGAAGTTTATCTTCTCAATCTT
TGCTGGGGGAAACATTTGAAGATATATGGCTATTTGAGATTTTTGCTAATTGATTTTTTATGCTTCAAATATTTTTATTGGTTGACTGAGATGAATTTTT
ATTAGATTAGTAGATATATATGGATATTAAAAATATACTATTTCAGAACAGTATCAAGATAAATAGAACATTTCCTTAAATAAATTGATATTAGATAATG
TGAACCTACCAGCACCCTATCTTAAGCTCGATATACGTTTGAGAGGACTTTCTTATCAAATGGGTCTTATTGAATAACATTTGTGCATCTATAAACTTGA
ATAACACTGGTACAATTAGAGGATTTTAAATACTGTGGGTATATGTCAGAGGACTTTTTACATAGACTGTCTTTCGAGCTCACCGTTTCTGCTTGCAGTA
AACCTTAAAAATATTAAGTCAATTAGAAAATCTCCTTGTATACAATGTTTCTAGCGACATTTTCTTCGGGACAATCTGAATCATCAATCAGAACCTTCAG
GCCATTTCGGTTTGTGACTCTAGAGAATGCTACCGCCCTGTTTGGGGGAGCTTCTCCCAGCTGCAGCTTTTCCCAAAAGCTGCTTCTGCTAGAAGCTGCC
TCAAACAGTCCACAGCTTCTGAGAATCTGCAGTTATAGATTCTGAAAAATGAACTAAGAAGCCAGAAGCTGGGTTTCAGAGCTTTTCCAGATTCTCAAAA
GCTGGCTACCAAACAGCTGCTTCTCGGAATCTAAAGCTCCCCAAACAGGCCCCCATGGCAGAAGACTTGTTTAGGACAAATGGCCAGTTGGTGTCGCTCG
GTGACATGATGATTGCCTGCAGTTTGGTTGATGTTACGAAGTAGCATGACAGGCAGGCCTACTTTAAGCTTAAGTTCGTGGTTTGGTATTCCAGGGAATT
TCAACGTGTTGAGGAACTCGGTAGGATACATGTGCTCCATGCTACTGTTGTTTGTCATCGCTTTGCAAACGGTGTCACAGCTTAGCAAAATGTAAGGTGG
AGGCGGTGCAGTGGTTGGGTCACGGGTCGGCCAGGGTGGCGAGCCTGGGGGAATCGGCGGGCAGGCAAAGGTTGGTTGACGCTGTTTTTCTTTTCAATTC
CTTTGCATGAATTATATGTTTGGATGCTTCATGTGCAATCGGTTGCAAAATTAGGTCTGTATATACAGAGATGTGATAAAAAATCATAAATAAAATAACA
GATTGCATAGTAATATATCTCAGTTTATGCATATACAACATTCGACTATTATAATACAATACATGTAATGATCTGTATTGACTATGAACTATTCTTTCTA
GCTAGTATCATTAACTGTAGGATATTCTATCGAGCTACTGCTAATTATGAACTATTATCATGAGCTCTAAGCACTATTTGTATACTTAGAATTCATTTTC
CTTGTTCTCTGAGGCCTTGTGTTGCATGCTTTATTGTCTGATTGAACACATGTTTTCTGACGTTTTTCAACAGAGCTTTCCTTGCCTATGCCATTGATGG
TTTTAG