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Detailed information on CNT30104288


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697441Oryza rufipogonOryza sativa78.0281.896.82472forward
CNT30110139Oryza rufipogonOryza longistaminata56.2100.2997.06340forward
CNT30117868Oryza rufipogonOryza nivara82.8110099.2501forward

Expression of CNT30104288

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MMFGAMVDLNYHPVVNFCGLKCEDMCTRLYELICNMV

>peptide 2 (42 aa)
MVTLSSVSAIYYGDIRLVLQSSPFIQKLISYLSIVSCCFSSA*

Sequence

>CNT30104288
GACGACCTGGGTTCAAAGCCTCACCCCTCCTAATTATTTGATATTAGGTCCTTCCCTAATATTCTAGTTGTTTTTTATCATAACTTTAGTGTCTAACTTT
TAGTGCTACACTCCTATGCATTCTAGTTCAGTTCCTTGTTTGCTTGGCCAGTGAAATGAGGTGGGTTGGGGATGGTGACATTGAGTTCTGTTAGTGCAAT
ATATTATGGGGACATCAGATTAGTGTTGCAAAGTAGCCCTTTCATTCAAAAACTAATATCGTATCTGTCGATTGTTTCTTGTTGTTTCTCTAGCGCATAA
AAAAATAATCTAACATATGGTACTATCCTATCAGATTGCTGTGCTCCTCCCCATCACCCTCGGGCAGGTGTTGATATAAGCTGTCTTAGTCTCCTTTATT
ATCTTATGCACTGTGATGAACTCCATCTACTTATTTTAGTTGTGTTGATGCTTCTATGAGGTTACTGTCGTGTGGTGGACTTGGTTATGTAAAATGATGT
TTGGTGCTATGGTGGACTTAAATTATCATCCTGTGGTAAACTTTTGTGGACTTAAATGTGAAGATATGTGTACTAGGTTGTATGAACTTATTTGTAATAT
GGTGC